Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1128 ATGAGTTTCGACAACCCCATATCAGTTGGGCCATGGGGAGGTCAAGATGGATTGCGCTGGGACGATGGGGTGTACTCTACAGTTAGGCAGTTGGTGATAGCTCATGGAGTTGGTATCGACTCCATCTTGATTGAATATGATAAGAACGGAAGCTCGGTGTGGTCGGAAAAGCATGGTGGAAGTGGAGGCACTAGAACCAACAGGGTCAAGCTTGATAGCCCGGATGAGTTTCTAACTTCAATTCATGGACACTATGGTAGCTTACTTGAAAGGGGGCCAGTCTTTGTTCGATCACTTACTTTGGAGAGCAACAAGAGAACATATGGTCCATTTGGCATTGAACAAGGAATATATTTCTCTTTACCAACGACTGGGGGCAAGATCATTGGGTTCCATGGCAAGTCGGGCTGGTATCTTGATGCAATTGGAGTTCATTTGAAGCCTCATAAGCCAAGTCCCTTTAAATCAAGTGTTCAGACGCAAAATTATTTTTCTACTGGTACTGATAGAGTTGCGTACTCAGTAGTACAAGGAGGTGTAAGCAGAGGCTATGATGTTATTGTTGCTTTTAGACAGAAGGATGACTACAACAGCAATGGTTCAGCATACAATTTCCCAAACCAAACTTGTTATTCTGGAGAATCCAGTGATTCAGAAAAGGGCAAGGTGGGTGGTGTGAAAAAATTGTCATACAGCAATGTTTCACCACAGAATCTCTCAAGGCAAACTTCTAGGTCTGGAGAGTCCAGTGATGCTGAAACCAAAGGCAAGATTATTGGTGCTGTAGAGAGAGTGCCCTCAAAAGTTAGAGGCGCAGTGACATATGGACCTTGGGGTGGTAAGGGTGGTTTTGTGTTTGATGATGGAGTCTCCACAGGTGTTCGGCAAATCAATCTATCGCGCAACATTGGAATTGTGTCAATAAAAGTTTTGTATGACCAGAATGGGCAAGCTGTATGGGGAAGCAAAAATGGCGGAACAGGAGGATTTAGAAATGACAAGATAGTAATCGATTATCCATACGAAGTCCTAACGCATATAACAGGCTACTATGCGCCTACAATGGTCATGGGACCTAACATCATCAAGTCACTCACCTTCCACACAACAAAAACCAAATATGGGCCATTTGGAGAAGAACAAGGAACTCCTTTTTCCTCCAACATAAAGGAAGGGGTGATCGTCGGATTCCATGGGAGAACAGGGTTGTTCATAGATGCTATAGGTGTTCATATGATCGAAGGGAAAGCGAGACCGCCAACACGTCCTCCCTCCAACAAACAACTCAACCAAAACCAAAGCCAAATCCAAGTACTGGACAACGCTGCTGAAGTGGATAGGCCACTATGGTACTCGAATAAGTCAGTACCAACCAAGGGAGGACCATTTGAAGAGGTTGGCAGTGGAGTGGTCAAAGAACCAGCCCCATGTGGACCAGGTCCATGGGGTGGGGATGGAGGGCGGCCATGGGACGATGGAGTATTTTCCGGGATTAAGCAGATCTATCTGACAAGAGCAGAAGCCATTTGCTCGATACAGATTGAGTATGCTAGGAATGGACAGTCTATTTGGTCCACAAAACATGGAGGAGACTACGGAACCACCACACATAGGGTGAAATTGGAGTACCCACATGAAGTAGTGAGTTGTATATGTGGGTATTATGGTCCCATCAGCATAAACGAGCCGTGGAACGCTATCAAGTCACTGACTTTTTATACCAGCCGAGGAAAGTATGGGCCGTTTGGTGAGGAAATAGGAACCTATTTTACTTCAACGAGGACAGAAGGAAAGGTGGTTGGCTTCCATGGAAGGAGCAGCCTGTACTTGGATGCCATTGGAGTGCACATGCAACACTGGTTAGGAGATCAAAGGACCCTGAAGCCCAATCTCTTCAAAATTTTCTACTGA 1911 0.4553 MSFDNPISVGPWGGQDGLRWDDGVYSTVRQLVIAHGVGIDSILIEYDKNGSSVWSEKHGGSGGTRTNRVKLDSPDEFLTSIHGHYGSLLERGPVFVRSLTLESNKRTYGPFGIEQGIYFSLPTTGGKIIGFHGKSGWYLDAIGVHLKPHKPSPFKSSVQTQNYFSTGTDRVAYSVVQGGVSRGYDVIVAFRQKDDYNSNGSAYNFPNQTCYSGESSDSEKGKVGGVKKLSYSNVSPQNLSRQTSRSGESSDAETKGKIIGAVERVPSKVRGAVTYGPWGGKGGFVFDDGVSTGVRQINLSRNIGIVSIKVLYDQNGQAVWGSKNGGTGGFRNDKIVIDYPYEVLTHITGYYAPTMVMGPNIIKSLTFHTTKTKYGPFGEEQGTPFSSNIKEGVIVGFHGRTGLFIDAIGVHMIEGKARPPTRPPSNKQLNQNQSQIQVLDNAAEVDRPLWYSNKSVPTKGGPFEEVGSGVVKEPAPCGPGPWGGDGGRPWDDGVFSGIKQIYLTRAEAICSIQIEYARNGQSIWSTKHGGDYGTTTHRVKLEYPHEVVSCICGYYGPISINEPWNAIKSLTFYTSRGKYGPFGEEIGTYFTSTRTEGKVVGFHGRSSLYLDAIGVHMQHWLGDQRTLKPNLFKIFY* 637
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1128 636 CDD Jacalin 490 618 IPR033734 GO:0030246
Vvi18g1128 636 CDD Jacalin 286 412 IPR033734 GO:0030246
Vvi18g1128 636 SUPERFAMILY Mannose-binding lectins 5 148 IPR036404 -
Vvi18g1128 636 FunFam Jacalin-related lectin 33 479 620 - -
Vvi18g1128 636 ProSiteProfiles Jacalin-type lectin domain profile. 476 619 IPR001229 -
Vvi18g1128 636 FunFam Jacalin-related lectin 33 4 149 - -
Vvi18g1128 636 Pfam Jacalin-like lectin domain 19 148 IPR001229 -
Vvi18g1128 636 Pfam Jacalin-like lectin domain 487 618 IPR001229 -
Vvi18g1128 636 Pfam Jacalin-like lectin domain 285 412 IPR001229 -
Vvi18g1128 636 Gene3D - 471 618 IPR036404 -
Vvi18g1128 636 Gene3D - 2 146 IPR036404 -
Vvi18g1128 636 Gene3D - 262 412 IPR036404 -
Vvi18g1128 636 ProSiteProfiles Jacalin-type lectin domain profile. 272 414 IPR001229 -
Vvi18g1128 636 SUPERFAMILY Mannose-binding lectins 272 412 IPR036404 -
Vvi18g1128 636 FunFam Jacalin-related lectin 33 270 414 - -
Vvi18g1128 636 CDD Jacalin 17 147 IPR033734 GO:0030246
Vvi18g1128 636 MobiDBLite consensus disorder prediction 234 249 - -
Vvi18g1128 636 PANTHER JACALIN-RELATED LECTIN 3 278 519 - -
Vvi18g1128 636 SMART Jacalin_2 487 619 IPR001229 -
Vvi18g1128 636 SMART Jacalin_2 17 148 IPR001229 -
Vvi18g1128 636 SMART Jacalin_2 283 414 IPR001229 -
Vvi18g1128 636 SUPERFAMILY Mannose-binding lectins 476 617 IPR036404 -
Vvi18g1128 636 MobiDBLite consensus disorder prediction 234 257 - -
Vvi18g1128 636 ProSiteProfiles Jacalin-type lectin domain profile. 6 148 IPR001229 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1128 Vvi-Chr18 11268722 11271276 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g1128 279 618 EF-hand Containing Proteins AT1G33790 27.089 3.88e-19 88.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1128 - - vvi:100255764 1278.85