Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1127 ATGGCGCCGAAGCTTCTGCTGACGTTTGTTATATACCGTTTAATCTCCACCGTCGGGTTGACCTTAGACCCCACCGACCTCCTTCGACTAGAAGTCGACGGTCACTTGAGCGTCGACCCCTCCGACGTGAAAACGGCTTCCGTGGACTTCGGAATGATGAACCGAGCGGAGCCATTGGCGGTTCTTCACCCGAGTTCAGCGGAGGATGTAGCTCGACTCGTCGGAGCGGCTTACGGGTCGGCTCATGGGTTGAGTGTGTCGGCGAGAGGGCATGGGCATTCCATTAATGGGCAGGCGCAGACGAGTAGCGGAGTGGTGATTGAGATGAGTGCGTCAAAGGGTGTGAGGCAGTGGGGTTTGCCTCGTGTTTCAGAGCAGTCGAGGTATGTGGACGCGTGGGGTGGAGAGCTGTGGATAGATGTGCTGAAGACCACACTAGAGCACGGGCTTGCACCAAAATCATGGACTGATTACTTGTATCTCTCCGTGGGTGGAACCCTTTCGAATGCTGGGATTAGCGGACAAGCTTTCAATCATGGACCGCAGATTAGCAATGTCTATGAACTCGATGTTGTCACAGGCAAAGGCGAGCTCTTGACATGCTCAGAAGAACAAAACTCAGAACTGTTCCATGCTGTTCTAGGTGGTCTGGGGCAATTTGGGATTATCACCAGAGCAAGAATAGGTCTGGAACCAGCTCCTCAGAGGGTGAGGTGGATCCGAGTACTGTACTCCAATTTTTCGACATTTACCAAGGACCAAGAGTATCTCATATCCCTGCATGGACAGCCACCTAACCAGAAATTCGACTATGTTGAGGGCTTTGTTATAGTTGATGAAGGCCTTATCAACAACTGGAGGTCCTCCTTTTTCTCCCCTCGCAACCCTGTTAAAATCTCCTCTTTTGGAACTAACGGGGGTGTGCTCTACTGCTTAGAGGTCACCAAGAACTACCATGAATCCACTGCCGATACTATTGACCAGGATGTAGAGGCTCTGCTGAAGAGACTAGATTTTATTCCGTCATCGGTCTTCACAACGGATCTTCCATATGTGGATTTCCTGGACCGGGTTCACAAGGCGGAGCTGAAGCTCCGGTCGAAGGGTTTGTGGGACGTGCCGCACCCTTGGCTCAACCTTTTTGTCCCCAGATCAAGGATTGCTGACTTCGATGAAGGCGTATTCAAGGGCATTTTGGGGAATAAGACAAGTGGCCCCATCCTCATCTACCCTATGAACAAAAACAAGTGGGACGACCGCACATCGGTGGTTACGCCAGAGGAGGACGTGTTTTACCTTGTGGCGCTGCTGCGGTCAGCTTTGGATTCCGGAGACGAGGCCCAGAGTTTGGAGTATCTCAGCAATCAGAACCGTCAGATCCTCAGATTCTGTGACGATGCTGGGATCAAGGTGAAGCAGTATCTGCCTCACTACACCACGCAAGAGGACTGGGTGGACCACTTTGGTGATGACAAGTGGACTTTGTTTTCCAAGAGAAAGATGGACTTCGACCCCCGGCGTATTCTAGCCACCGGCCAGCGCATTTTTAAACCCATGGCGGCTTCTTCTTGGTGA 1575 0.5181 MAPKLLLTFVIYRLISTVGLTLDPTDLLRLEVDGHLSVDPSDVKTASVDFGMMNRAEPLAVLHPSSAEDVARLVGAAYGSAHGLSVSARGHGHSINGQAQTSSGVVIEMSASKGVRQWGLPRVSEQSRYVDAWGGELWIDVLKTTLEHGLAPKSWTDYLYLSVGGTLSNAGISGQAFNHGPQISNVYELDVVTGKGELLTCSEEQNSELFHAVLGGLGQFGIITRARIGLEPAPQRVRWIRVLYSNFSTFTKDQEYLISLHGQPPNQKFDYVEGFVIVDEGLINNWRSSFFSPRNPVKISSFGTNGGVLYCLEVTKNYHESTADTIDQDVEALLKRLDFIPSSVFTTDLPYVDFLDRVHKAELKLRSKGLWDVPHPWLNLFVPRSRIADFDEGVFKGILGNKTSGPILIYPMNKNKWDDRTSVVTPEEDVFYLVALLRSALDSGDEAQSLEYLSNQNRQILRFCDDAGIKVKQYLPHYTTQEDWVDHFGDDKWTLFSKRKMDFDPRRILATGQRIFKPMAASSW* 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1127 524 PANTHER GULONOLACTONE OXIDASE 24 517 - -
Vvi18g1127 524 SUPERFAMILY FAD-linked oxidases, C-terminal domain 234 516 IPR016164 GO:0003824|GO:0050660
Vvi18g1127 524 ProSiteProfiles PCMH-type FAD-binding domain profile. 54 233 IPR016166 GO:0071949
Vvi18g1127 524 Gene3D - 46 517 IPR016167 -
Vvi18g1127 524 FunFam Cytokinin dehydrogenase 1 109 235 - -
Vvi18g1127 524 Gene3D - 237 474 IPR016170 -
Vvi18g1127 524 ProSitePatterns Oxygen oxidoreductases covalent FAD-binding site. 58 93 IPR006093 GO:0016491
Vvi18g1127 524 Gene3D - 109 235 IPR016169 -
Vvi18g1127 524 FunFam Cytokinin dehydrogenase 2 236 474 - -
Vvi18g1127 524 Pfam Cytokinin dehydrogenase 1, FAD and cytokinin binding 234 516 IPR015345 GO:0009690|GO:0019139|GO:0050660
Vvi18g1127 524 Pfam FAD binding domain 58 202 IPR006094 GO:0050660
Vvi18g1127 524 SUPERFAMILY FAD-binding/transporter-associated domain-like 32 232 IPR036318 GO:0050660
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1127 Vvi-Chr18 11256775 11261092 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1127 K00279 - vvi:100267760 1065.06