Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1125 ATGACTAGTTCATCTGCCCCTTCTCGCAAGGTGTTAAGCAAGATCGCCTGCAATCGCCTCCAGAAAGAGCTGGTGGAATGGCAGGTCAACCCTCCTGCGGGATTCAAGCATAAAGTCACAGATAATCTACAGAGATGGGTGATCGAAGTCAACGGAGCTCCGGGAACTCTGTACGCCAACGAATCGTACCAGCTTCAAGTGGATTTTCCCGAGAATTACCCCATGGAAGCACCGCAGGTTGTTTTTGTCCCGCCAGCTCCTCTGCATCCTCACATATACAGCAATGGGCATATCTGTTTAGATATTCTATATGATTCATGGTCCCCAGCCATGACAGTTAGTTCAATCTGTATCAGCATACTCTCCATGTTATCGAGCTCAACTGTGAAGCAACGCCCTGCAGATAATGACCGCTATGTGAAAAATTGTCGGAATGGCAGATCTCCCAAGGAGACTAGATGGTGGTTCCATGATGATAAAGTGTAA 486 0.4753 MTSSSAPSRKVLSKIACNRLQKELVEWQVNPPAGFKHKVTDNLQRWVIEVNGAPGTLYANESYQLQVDFPENYPMEAPQVVFVPPAPLHPHIYSNGHICLDILYDSWSPAMTVSSICISILSMLSSSTVKQRPADNDRYVKNCRNGRSPKETRWWFHDDKV* 162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1125 161 Pfam Ubiquitin-conjugating enzyme 19 154 IPR000608 -
Vvi18g1125 161 SUPERFAMILY UBC-like 10 129 IPR016135 -
Vvi18g1125 161 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 15 161 IPR000608 -
Vvi18g1125 161 FunFam probable ubiquitin-conjugating enzyme E2 16 13 161 - -
Vvi18g1125 161 Gene3D Ubiquitin Conjugating Enzyme 13 161 IPR016135 -
Vvi18g1125 161 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 88 103 IPR023313 -
Vvi18g1125 161 CDD UBCc 17 117 IPR000608 -
Vvi18g1125 161 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 15 143 - -
Vvi18g1125 161 SMART ubc_7 18 161 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1125 Vvi-Chr18 11241637 11245411 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g1125 12 124 Miscellaneous Gene Families AT1G17280 28.814 5.29e-07 45.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1125 K10688 - vvi:100262599 328.561