Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vvi18g1124 | ATGGCGATGTCTCCGGCCACAACTCTTCAGCGGCGGTGGAGACTTCCCAACTTCACTCCAACTATAACGGCCTTAACATCTCTGAAATCGATCTCCTTTTCTCCTCCTCTTAAACCTAAACATGGCGCCCTCTCCTGTTCCACGGATTCTATCAACCACAGTCCCCAAGAATCGTCAAAAGGAGGCCATCTGAAACCTGGCTTGTATTTGGTTGGAACACCAATTGGGAATCTGGAAGACATCACTTTTCGCGCTCTTCGTGTTTTAAGATCAGCCAATGTGATACTTTCAGAAGACACAAGGCATTCAGGAAAGTTGCTACAACATTATGATATTAAAACTCCCCTTTTGAGTTATCACAAATTCAATGAATCTCGAAGAGAACAGACAGTACTAAAAAGATTAAGAGAGGGGGATATTGTGGCACTTATCAGTGATGCAGGGACACCAGGCATCAGTGACCCTGGTATGGAATTGGCAAAATTATGTGTGGATGAAAATATTCCAGTTATACCCATCCCTGGTCCTTCTGCTTTGGTAGCTGCTCTTTCTGCCTCAGGCTTGGCCACCAATGAATTTACTTTTGTTGGATTTCTCCCTAAACATGCTGGATCAAGGAGAGAGAGGCTAACAGTTTCTGCAAATGAAGCAGCAACACAGGTATTCTTTGTTCCTCCACACAAGCTTCATCAGTTTCTTGAGGAAACTTCTTCACTCTTCGGTGACACGAGACGATGTGTCATAGCCCGCGAAATGACAAAAATACATGAAGAGTTTTGGCGCGGTACACTGGGGAAAGCAAAAGAAGCATTTTCAAATCACCATCCTAAGGGAGAAATTACACTCTTGATTGAAGGAAAGGAAAGTTGTGTGGTTGAAAATCCATCAGAGTTTCAACTCGAAAACAAATTGGGAGATTTGATCTCCAAAGGGCATAGTCTTTCTATGGCAGTTAAACTAGTGGCTGAAGGAACATCGATGAGAAGAAAAACAATATATTCGCTTGCATTGAGGAAATTTGGAAAGCAACTTGAGGCAGAGGATGATTCAAATTAA | 1056 | 0.4271 | MAMSPATTLQRRWRLPNFTPTITALTSLKSISFSPPLKPKHGALSCSTDSINHSPQESSKGGHLKPGLYLVGTPIGNLEDITFRALRVLRSANVILSEDTRHSGKLLQHYDIKTPLLSYHKFNESRREQTVLKRLREGDIVALISDAGTPGISDPGMELAKLCVDENIPVIPIPGPSALVAALSASGLATNEFTFVGFLPKHAGSRRERLTVSANEAATQVFFVPPHKLHQFLEETSSLFGDTRRCVIAREMTKIHEEFWRGTLGKAKEAFSNHHPKGEITLLIEGKESCVVENPSEFQLENKLGDLISKGHSLSMAVKLVAEGTSMRRKTIYSLALRKFGKQLEAEDDSN* | 352 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vvi18g1124 | 351 | ProSitePatterns | RsmI AdoMet-dependent methyltransferase protein family signature. | 145 | 156 | IPR018063 | GO:0008168 | |
| Vvi18g1124 | 351 | PANTHER | RIBOSOMAL RNA SMALL SUBUNIT METHYLTRANSFERASE I | 64 | 348 | IPR008189 | GO:0008168 | |
| Vvi18g1124 | 351 | MobiDBLite | consensus disorder prediction | 45 | 59 | - | - | |
| Vvi18g1124 | 351 | SUPERFAMILY | Tetrapyrrole methylase | 66 | 284 | IPR035996 | GO:0008168 | |
| Vvi18g1124 | 351 | PIRSF | MTase_YraL | 56 | 342 | IPR008189 | GO:0008168 | |
| Vvi18g1124 | 351 | Hamap | Ribosomal RNA small subunit methyltransferase I [rsmI]. | 67 | 286 | IPR008189 | GO:0008168 | |
| Vvi18g1124 | 351 | Gene3D | - | 176 | 291 | IPR014776 | GO:0008168 | |
| Vvi18g1124 | 351 | FunFam | Ribosomal RNA small subunit methyltransferase I | 64 | 175 | - | - | |
| Vvi18g1124 | 351 | Pfam | Tetrapyrrole (Corrin/Porphyrin) Methylases | 68 | 267 | IPR000878 | GO:0008168 | |
| Vvi18g1124 | 351 | NCBIfam | 16S rRNA (cytidine(1402)-2'-O)-methyltransferase | 68 | 337 | IPR008189 | GO:0008168 | |
| Vvi18g1124 | 351 | CDD | RsmI | 69 | 285 | IPR008189 | GO:0008168 | |
| Vvi18g1124 | 351 | FunFam | Ribosomal RNA small subunit methyltransferase I | 175 | 291 | - | - | |
| Vvi18g1124 | 351 | Gene3D | - | 63 | 175 | IPR014777 | GO:0008168 | |
| Vvi18g1124 | 351 | MobiDBLite | consensus disorder prediction | 44 | 63 | - | - |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vvi18g1124 | K07056 | - | vvi:100262613 | 682.945 |