Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1120 ATGAAATTGCGGTTTCCAGAAGAGAGGAGAGGAGCAATGAAGGCCACCGTGAGTTCTTGCTTTTCTTCTATTTCCATCATCCCTCCCTCGTCTCTAGTCCACGACCCTCACTCTCCATTCCCTCCAGTCCGTCTTCGTTCAATTCCTGCTTTTACTCTCAGAACGCACACCACTACTTCTTTCAGACTCGTCAGAGTTCTCCAACGAGGAGTTGGACTCGTGTCTCCCGACGACCTGTCTCTACCGGAGCCCGTGATTGATGTGAAAGAGGAAGAGGTGTTTGCAGTGGTTGATGGAGTCGCAGGAACCAAAGCGGAAGAGAAAACCCTAAAGGCCCCCACTAGAGTTAAGAAGAAGGGAGGTGAAGGAGAGAGTGATGATAATAGGTTCAAGCTGCGTAACGGAAGAGAGGTTTTTGAGGAAAAAGCATACCTTGTTGCTGTTGAGCTCAAAGGTGACATGGAGTATTCCTTTGGCATAGAAGAATCACTTAAGGAACTGGCCCAGTTAGCTGACACTGCTGGACTTATGGTTGTTGGTTCTACATCTCAAAAACTTAGTACTCCAAATCGAAGGACATATATTGGATCTGGCAAGGTTGCAGAAATTAAGAGTGCAATCCATGCACTGGATGTTGAGACCGTAATATTTGATGATGAGCTTTCAGCAGGGCAATTGCGTAATTTGGAAAAGGCTTTTGGTGGAGATGTTAGAGTCTGTGACCGCACTGCCCTCATCCTTGATATCTTTAACCAGCGAGCAGCAACACATGAAGCAGCTTTACAGGCAAATGTTGCATTGGCACAAATGGAATATCAGTTGCCACGTCTCACGAAGATGTGGACTCACCTTGAGCGTCAAGCAGGAGGCAAGGTGAAAGGAATGGGTGAGAAACAAATTGAAGTGGATAAGCGTATCTTACGCACTCAAATTGGTGCTCTTAAAAAAGAGCTAGAATCAGTTCGGCAACATCGGAAGCAGTATAGAAACCGGCGTTTCTCTGTGCCCGTTCCTGTTGTATCTTTGGTTGGGTACACAAATGCTGGAAAGAGTACACTCCTAAATAGATTAACTGGGTCTAATGTTCTTGCTGAGGATCGGTTATTTGCAACACTTGATCCAACTACAAGAAGGGTGCAGATGAAGAATGGTAGGGAATTTCTTCTCACAGATACAGTTGGATTCATCCAAAAGTTACCAACTATGCTGGTTGCGGCCTTCAGAGCAACATTGGAGGAGATATCAGAATCATCACTTTTGGTGCATGTGGTGGACATTAGCCATCCACTAGCAGAGCAGCAGATAGATGCTGTGGACAAAGTTCTGTCAGAATTAGATGTGTTGTCAATTCCAAGATTGATGGTCTGGAACAAGGTTGATAAAGCTAGCAATCCTCAAAAAATCAAATTAGAAGCAGAGAAAAGAGAAGATGTTGTCTGCATATCTGCTTTAAATGGTGATGGATTGAATGAATTCTGCAATGCAGTTCAGGAAAAATTGAAGGATTCTATGGTTTGGGTGGAAGCTTTGGTCCCATTTGACAAAGGGGAACTCCTCAGTACCATTCATCAGGTTGGAATGGTGGAGAGAACTGAATATACAGAAAACGGGACATTGGTCAAGGCACATGTTCCCCTTCGGTTCGCAAGGCTACTCACCCCCATGAGGCAACTCTGTAAATCATGA 1686 0.4478 MKLRFPEERRGAMKATVSSCFSSISIIPPSSLVHDPHSPFPPVRLRSIPAFTLRTHTTTSFRLVRVLQRGVGLVSPDDLSLPEPVIDVKEEEVFAVVDGVAGTKAEEKTLKAPTRVKKKGGEGESDDNRFKLRNGREVFEEKAYLVAVELKGDMEYSFGIEESLKELAQLADTAGLMVVGSTSQKLSTPNRRTYIGSGKVAEIKSAIHALDVETVIFDDELSAGQLRNLEKAFGGDVRVCDRTALILDIFNQRAATHEAALQANVALAQMEYQLPRLTKMWTHLERQAGGKVKGMGEKQIEVDKRILRTQIGALKKELESVRQHRKQYRNRRFSVPVPVVSLVGYTNAGKSTLLNRLTGSNVLAEDRLFATLDPTTRRVQMKNGREFLLTDTVGFIQKLPTMLVAAFRATLEEISESSLLVHVVDISHPLAEQQIDAVDKVLSELDVLSIPRLMVWNKVDKASNPQKIKLEAEKREDVVCISALNGDGLNEFCNAVQEKLKDSMVWVEALVPFDKGELLSTIHQVGMVERTEYTENGTLVKAHVPLRFARLLTPMRQLCKS* 562
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1120 561 Gene3D - 254 323 - -
Vvi18g1120 561 Pfam GTP-binding GTPase Middle Region 253 332 IPR032305 -
Vvi18g1120 561 CDD HflX 297 500 IPR030394 GO:0005525
Vvi18g1120 561 NCBIfam GTPase HflX 143 500 IPR016496 GO:0005525
Vvi18g1120 561 ProSiteProfiles HflX-type guanine nucleotide-binding (G) domain profile. 338 504 IPR030394 GO:0005525
Vvi18g1120 561 Coils Coil 311 331 - -
Vvi18g1120 561 Hamap GTPase HflX [hflX]. 164 529 IPR016496 GO:0005525
Vvi18g1120 561 Gene3D - 337 505 IPR027417 -
Vvi18g1120 561 PANTHER GTP-BINDING PROTEIN HFLX 106 547 IPR016496 GO:0005525
Vvi18g1120 561 Gene3D - 154 253 IPR042108 -
Vvi18g1120 561 FunFam Predicted protein 155 279 - -
Vvi18g1120 561 Pfam HflX C-terminal domain 468 539 IPR045498 -
Vvi18g1120 561 Pfam GTP-binding GTPase N-terminal 161 250 IPR025121 -
Vvi18g1120 561 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 338 510 IPR027417 -
Vvi18g1120 561 PRINTS GTP1/OBG GTP-binding protein family signature 407 425 IPR006073 GO:0005525
Vvi18g1120 561 PRINTS GTP1/OBG GTP-binding protein family signature 340 360 IPR006073 GO:0005525
Vvi18g1120 561 FunFam GTPase HflX 337 506 - -
Vvi18g1120 561 Pfam 50S ribosome-binding GTPase 340 458 IPR006073 GO:0005525
Vvi18g1120 561 NCBIfam small GTP-binding protein domain 339 495 IPR005225 GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1120 Vvi-Chr18 11188638 11195618 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1120 K03665 - vvi:100247233 1058.51