Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1117 ATGAGCGATGGAGAAGACGCAGTGCGTCGACGTAGTGTGTTGGCGGACTACCGTAAAAAGCTCCTCCACCACAAAGAACTCGATTCTAGAGTCCGATCAGTGAGGGAGAGTTTACGTGGTGCTAAGAAGGAGTTCAACAAAACGGAGGATGATTTGAAGTCTCTTCAGAGTGTTGGGCAGATCATTGGAGAAGTTCTCCGGCCTCTTGACAATGAACGCTTGATTGTAAAAGCAAGTAGTGGACCCAGGTATGTAGTTGGCTGTCGCAGTAAAGTGGATAAGGAAAAACTGACTTCTGGAACAAGAGTGGTTCTTGATATGACAACACTCACAATCATGCGAGCTCTTCCACGTGAAGTTGATCCAGTTGTTTATAACATGTTGCACGAAGATCCTGGTAATGTCAGCTACTCAGCTGTGGGTGGGTTATCAGATCAAATCCGAGAACTCAGGGAATCAATTGAGCTACCTCTAATGAATCCTGAACTCTTTCTTAGAGTTGGAATTAAACCTCCCAAGGGTGTTCTTCTTTATGGGCCTCCTGGTACTGGGAAGACATTATTAGCTAGAGCAATTGCCAGTAATATAGATGCCAACTTCTTGAAGGTTGTTTCAAGTGCAATAATTGATAAATACATTGGGGAAAGTGCAAGGTTAATACGAGAAATGTTTGGATATGCACGTGATCACCAACCCTGCATTATTTTTATGGATGAGATTGATGCCATCGGTGGACGCCGTTTCAGTGAGGGAACAAGTGCTGACCGTGAAATACAAAGAACACTGATGGAGTTACTTAATCAGCTTGATGGATTTGACCAGCTTGGGAAGGTTAAAATGATTATGGCAACAAACCGGCCTGATGTTCTTGACCCTGCACTTCTTCGTCCTGGGCGATTAGACAGAAAGATAGAGATTCCATTGCCAAATGAGCAATCAAGAATGGAAATCCTTAAGATTCATGCGGCTGGGATTGCCAAGCATGGCGAGATTGACTATGAGGCTGTTGTAAAGCTTGCAGAGGGATTTAATGGGGCTGATCTTCGTAATGTTTGCACGGAGGCTGGAATGTCTGCAATTCGTGCAGAACGTGATTATGTCATACATGAAGATTTCATGAAGGCTGTTCGGAAACTGAATGAAGCAAAGAAACTTGAATCTAGTGCTCACTACAATGCTGATTTTGGGAAAGACTAG 1197 0.4369 MSDGEDAVRRRSVLADYRKKLLHHKELDSRVRSVRESLRGAKKEFNKTEDDLKSLQSVGQIIGEVLRPLDNERLIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNVSYSAVGGLSDQIRELRESIELPLMNPELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFGYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHAAGIAKHGEIDYEAVVKLAEGFNGADLRNVCTEAGMSAIRAERDYVIHEDFMKAVRKLNEAKKLESSAHYNADFGKD* 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1117 398 FunFam 26S protease regulatory subunit 10B 309 380 - -
Vvi18g1117 398 Coils Coil 24 58 - -
Vvi18g1117 398 FunFam 26S protease regulatory subunit 10B 23 127 - -
Vvi18g1117 398 SMART AAA_5 171 310 IPR003593 GO:0016887
Vvi18g1117 398 ProSitePatterns AAA-protein family signature. 278 296 IPR003960 GO:0005524|GO:0016887
Vvi18g1117 398 Pfam Proteasomal ATPase OB C-terminal domain 62 117 IPR032501 -
Vvi18g1117 398 Gene3D - 128 308 IPR027417 -
Vvi18g1117 398 Gene3D - 309 379 - -
Vvi18g1117 398 PANTHER 26S PROTEASOME REGULATORY SUBUNIT 23 386 - -
Vvi18g1117 398 FunFam 26S protease regulatory subunit 10B 128 308 - -
Vvi18g1117 398 Gene3D - 22 127 IPR012340 -
Vvi18g1117 398 Pfam ATPase family associated with various cellular activities (AAA) 175 308 IPR003959 GO:0005524|GO:0016887
Vvi18g1117 398 Pfam AAA+ lid domain 331 373 IPR041569 -
Vvi18g1117 398 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 135 383 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1117 Vvi-Chr18 11169912 11174049 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g1117 134 378 Miscellaneous Gene Families AT3G47060 39.600 3.27e-53 187
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1117 K03064 - vvi:100252341 778.859