Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1114 ATGGGGTCAGTTTGTTGTGTTCCTGCAAAGGAGAGAGCCCTGCCCAACAGAGCCACAGGTGAAAGTTTGCATAGGAATGTAATATACTCACCATCCTGGAGCTTTCACTGGGATAATCGTGGGCGTGTGGCCGGAGAAGTTGACAATACTTCATATGGAGCAGCTCATGCAGTTAGCAGGAATGTTAGCTTGGAAATGAAGGGGAGATTAGGTCACGAAAGAGGTAATTTTTCAGATGGTGGAAGCTTGTTGGATAATTTTGGAACACCAACGTCTCAAAAGTCTCCAGTTCATGAAGGAACGGTTGCAAACTTGATGACCCCTTCAGATCTGTCCATGGAAAGTAATCATTATACGGAGGTGAAGAACTTAACAGAATCATCAGAGATTGCAGATTTATCTGCACCAAAGCTTTCATTTTCCATACCATCAACTTCATCTTTCTCAACACCAACAGAAGATCCATTGTCCTCCCAAACTCACCCTATTCCGGCCAACTCAACCCCATCAAGGCGGGCTCGTTGTTCACCAGGACACCAGCTGTTGAGACAAGTTTCAGATAGTCGAATCCTAGGATTGAAATCGCCAAATAACAACTCAATGTCTGACCGGAGACCATCTTTTGTACTCTCCACTTGCAGCAATGACTTAACAAATGGATCCCAAGGTGGTTCTTCTGATGGATGGTCCATGCGCACATTTTCCGAGCTTGTGGCCTCTTCTCAAAGAGAAAGGTGGTCTTTTGACAGTGAGCACTTTGGTTCTGGTCGTGGCAAGATAAGTGGGTCTAGCAGCAGGTTCTCATGTTCTCCCTCCATTGATCTGCAAAATTGTGGAGCTTGCTCAAAGCTCTTGACGGAGAGATCTTCATTTAGCAGCCAAAAGATTGTTCCTAATAATGAGCTCTCAGTGGTTGCTGTGCTGGTTTGTGGACATGTTTACCATGCTGAGTGTCTGGAGACTATGACACTGGAAGCTGACAGGTTTGACCCAGCTTGCCCAGTATGTATGGTTGGGGAGAAGCAAGTTTCAAAGATGTCAAGAAAAGCTTTGAGAGTGGAAGCAGAGTTAAAGGCAAGGAACAATAAGATATCCAGAAACAGGGTTGTGGACAGTTATCTTGACGGTGGTTTTGATGTTTGTGATCGCCGGAAACATACTGAACAAGAAAGAAAATTTCCAAAAATGGAATCCAGTTCCAGTGTAAGAAGCTCCTTTGCAAAGCCTTTCTTGAGGCGGCACTTTTCACTTGGGTCTAAGTGGAGTAGATCTCTTTCAGACAGCGACTCTACTAGGAAAAAGGGGTTTTGGGCAAGATATCGCAAGGATTGA 1332 0.4482 MGSVCCVPAKERALPNRATGESLHRNVIYSPSWSFHWDNRGRVAGEVDNTSYGAAHAVSRNVSLEMKGRLGHERGNFSDGGSLLDNFGTPTSQKSPVHEGTVANLMTPSDLSMESNHYTEVKNLTESSEIADLSAPKLSFSIPSTSSFSTPTEDPLSSQTHPIPANSTPSRRARCSPGHQLLRQVSDSRILGLKSPNNNSMSDRRPSFVLSTCSNDLTNGSQGGSSDGWSMRTFSELVASSQRERWSFDSEHFGSGRGKISGSSSRFSCSPSIDLQNCGACSKLLTERSSFSSQKIVPNNELSVVAVLVCGHVYHAECLETMTLEADRFDPACPVCMVGEKQVSKMSRKALRVEAELKARNNKISRNRVVDSYLDGGFDVCDRRKHTEQERKFPKMESSSSVRSSFAKPFLRRHFSLGSKWSRSLSDSDSTRKKGFWARYRKD* 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1114 443 ProSiteProfiles Zinc finger RING-type profile. 278 336 IPR001841 -
Vvi18g1114 443 MobiDBLite consensus disorder prediction 144 174 - -
Vvi18g1114 443 MobiDBLite consensus disorder prediction 190 206 - -
Vvi18g1114 443 MobiDBLite consensus disorder prediction 72 97 - -
Vvi18g1114 443 MobiDBLite consensus disorder prediction 421 443 - -
Vvi18g1114 443 SUPERFAMILY RING/U-box 277 337 - -
Vvi18g1114 443 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 264 338 IPR013083 -
Vvi18g1114 443 SMART ring_2 278 336 IPR001841 -
Vvi18g1114 443 PANTHER EXPRESSED PROTEIN 1 342 - -
Vvi18g1114 443 MobiDBLite consensus disorder prediction 426 443 - -
Vvi18g1114 443 MobiDBLite consensus disorder prediction 82 97 - -
Vvi18g1114 443 MobiDBLite consensus disorder prediction 187 206 - -
Vvi18g1114 443 MobiDBLite consensus disorder prediction 144 178 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1114 Vvi-Chr18 11156996 11160724 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1114 - - vvi:100242078 845.884