Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1108 ATGATCTCCCAGTTCTTCGTGCTCTCGCAGAGAGGCGATAACATCGTCTTCCGTGACTATCGTGGGGAAGTACCTAAAGGAAGTGCAGAGATATTTTTCCGGAAGGTTAAGTTTTGGAAGGAGGATGGAGAAGGGGATGCACCACCTGTCTTTAATGTGGATGGTGTGAACTACTTTCACGTGAAGGTTGCTGGATTGTTATTTGTTGCAACCACAAGAGTTAATGTGTCACCTTCTCTTGTTCTGGAACTTCTACAAAGGATTGCACGTGTCATCAAAGATTACCTTGGCATTCTAAATGAAGATTCATTGCGGAAAAATTTTGTTCTTGTGTATGAGTTGCTGGATGAAGTTATTGATTTTGGTTATGTGCAAACAACATCTACTGAGGTGTTGAAATCATATGTATTTAATGAGCCCATAGTTGTTGATGCTGCACGATTACCAACCCTTGGTCCTGCTTCCATTTTTATGCAAGGAACCAAAAGAATGCCAGGGACAGCTGTTACAAAATCTGTTGTAGCAAATGAGCCTGGTGGTAGAAAGAGGGAAGAAATTTTTGTGGACATAATTGAGAAAATAAGTGTCACATTTAGTTCTAGTGGATATATACTTACTTCTGAGATTGATGGCACCATTCAAATGAAGAGTTACCTTACAGGCAATCCAGAAATTCGGCTTGCTCTCAATGAAGAGCTGAGCATAGGGAGGGGTGGAAGGTCAATTTATGACTATAATAGTTCAACTGGATCCGGGACAGTTATACTAGATGACTGTAATTTCCATGAATCTGTGCATCTTGATAGTTTTGACATTGACAGAACGCTTACCCTGGTCCCACCAGATGGTGAATTTCCAGTAATGAACTACCGTATGACTCAGGAATTCAAGCCTCCCTTTCGTATTAATGCTTTGATTGAAGAAGCAGGAGCTCTCCGGGCTGAAGTAATTCTTAAGGTGCGTGCTGAATTCCCCTCAAGCATTACTGCAAACACAATTCAAGTACAAATGCCACTGCCCCCATATACAACTAGAGTTAGTTTTGAGTTGGAGCCTGGGGCTGTTGGAAACACAACCGATTTTAAGGAAGCAAATAAGAGACTAGAATGGGGTCTAAAGAAGATTGTAGGTGGATCTGAGCATACTCTACGTGCAAAGCTGACATTTTCACAGGAATTGCATGGAAATATCACAAGGGAAGCTGGACCTGTTAGCATGACCTTCACAATACCAATGTACAATGCTTCAAGACTTCAGGTAAAGTATTTGCAGATATCGAAGAAGTCCAAGGCCTACAATCCATATCGATGGGTGAGATACGTCACACAATCAAATTCCTATGTTGCCCGGTTATGA 1356 0.4152 MISQFFVLSQRGDNIVFRDYRGEVPKGSAEIFFRKVKFWKEDGEGDAPPVFNVDGVNYFHVKVAGLLFVATTRVNVSPSLVLELLQRIARVIKDYLGILNEDSLRKNFVLVYELLDEVIDFGYVQTTSTEVLKSYVFNEPIVVDAARLPTLGPASIFMQGTKRMPGTAVTKSVVANEPGGRKREEIFVDIIEKISVTFSSSGYILTSEIDGTIQMKSYLTGNPEIRLALNEELSIGRGGRSIYDYNSSTGSGTVILDDCNFHESVHLDSFDIDRTLTLVPPDGEFPVMNYRMTQEFKPPFRINALIEEAGALRAEVILKVRAEFPSSITANTIQVQMPLPPYTTRVSFELEPGAVGNTTDFKEANKRLEWGLKKIVGGSEHTLRAKLTFSQELHGNITREAGPVSMTFTIPMYNASRLQVKYLQISKKSKAYNPYRWVRYVTQSNSYVARL* 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1108 451 SUPERFAMILY SNARE-like 1 141 IPR011012 -
Vvi18g1108 451 PANTHER AP COMPLEX SUBUNIT MU 1 450 - -
Vvi18g1108 451 PRINTS Clathrin coat assembly protein signature 12 32 IPR001392 GO:0006886|GO:0016192|GO:0030131
Vvi18g1108 451 PRINTS Clathrin coat assembly protein signature 325 340 IPR001392 GO:0006886|GO:0016192|GO:0030131
Vvi18g1108 451 PRINTS Clathrin coat assembly protein signature 101 128 IPR001392 GO:0006886|GO:0016192|GO:0030131
Vvi18g1108 451 PRINTS Clathrin coat assembly protein signature 256 283 IPR001392 GO:0006886|GO:0016192|GO:0030131
Vvi18g1108 451 CDD AP4_Mu_N 3 143 - -
Vvi18g1108 451 Pfam Clathrin adaptor complex small chain 1 132 IPR022775 -
Vvi18g1108 451 Gene3D - 1 141 - -
Vvi18g1108 451 CDD AP-4_Mu4_Cterm 178 451 - -
Vvi18g1108 451 Pfam Adaptor complexes medium subunit family 182 450 IPR028565 -
Vvi18g1108 451 PIRSF AP_complex_mu 1 451 IPR001392 GO:0006886|GO:0016192|GO:0030131
Vvi18g1108 451 Gene3D Mu homology domain, subdomain B 182 446 - -
Vvi18g1108 451 ProSiteProfiles Mu homology domain (MHD) profile. 183 450 IPR028565 -
Vvi18g1108 451 SUPERFAMILY Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor 182 450 IPR036168 -
Vvi18g1108 451 Gene3D Mu homology domain, subdomain B 298 450 - -
Vvi18g1108 451 FunFam AP-2 complex subunit mu, putative 1 143 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1108 Vvi-Chr18 11107131 11116931 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1108 K12402 - vvi:100254067 891.723