Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1103 ATGTCCGGCCCACTTGACCGATTCGCCAGGCCTTGTTTTGAGGGGGCCAATCACGATGAACGAAGAGAACGGAAATCGGATTTCGAAAACTCGGAAGATGACAGGAGGACCAGAATTGGGAATCTTAAGAAGAAAGCAATCAATGCCTCCAGTAAATTCAAGCATTCTCTCAAGAAAAAGGGCAGGAGAAAGTCTCACGATCACCTCCTTTCTGTTTCCATCAAGGATGTTCGAGATGTGGAGGAGCTTCAAGCTGTGGAAGCATTTCGACAGGCGCTCATTTCCGATGACTTGCTTCCCGATAGACATGATGACTATCATATGCTCTTGAGATTTTTGAAAGCCAGGAAGTTTGATATGGAAAAGGCGAAGCACATGTGGACCGAAATGATTCACTGGAGGAAAAACTTCGGCACCGACACTATCTTGGAGGATTTTGAGTTCAAAGAGTTGAACGAAGTACTCAAGTACTATCCTCAGGGTTATCACGGTGTGGATAAGGAGGGGAGACCCGTTTATATTGAAAGACTTGGAAAAGTTGATTCAAACAAGCTGGTTCAAGTCACAACTTTGGATCGGTATGTGAAATACCATGTGCAGGAATTTGAAAAGTGTTTTGCATTTAAGTTTCCTGCTTGCTCTGTTGCAGCAAAGAGGCACATTGATTCAAATACAACACTTTTAGATGTTCAAGGCGTGGGTTTTAAGAACCTAACCAAAAATGCAAGAGACCTCATTATGCGGTTGCAGAAAATTGATGGAGACAACTATCCCGAGACACTTTGCCAAATGTTTATCATTAATGCTGGTCCAGGTTTTAGGCTGCTCTGGAACACCGTGAAGACTTTTCTTGATCCAAAAACAACTTCCAAGATTCATGTTCTTGGTAATAAGTACCAGAGCAAATTGCTTGAAATAATTGATGCAAGTGAGTTGCCCGAATTTCTCGGTGGTAGCTGTATCTGTGCAGATCAGGGAGGTTGTTTGAAGTCTGATAAGGGGCCGTGGAAAGATCCAAACATATTAAAGATGGTTCTCAGTGGTGAAGCACAATTTTCTAGACGAATAGTAACTGTTTCAAACAGTGATGGAAGAGTAATCACTAAAGAAAAGCCAATTTATTCAGTGATAAAAAGCAGTGACACATCTACGGCAGAGTCAGGATCCGAAGTGGAAGAATTCACTTCTCCCGAAGTAACAAGGGGCTATCTGCATCCAAGGTTGACTCCTGTCCGTGAAGAAGTTAGGATGGCTGGAAAGGTAAACTCTGCTGGTGGCTTTTCTGAATATGATGAAGTGCCCATGGTTGATAAGGCTGTGGATGCGGAATGGAAGAAGCAACTCTCCCTTCAAGACCCTTGTGATTCAAGAGGGATACTTTCTCTGCCAAGAGCAGAAAAGACTCCAGAAGGTTTGTGTGCTAAAATTTGGGGTGTGTTGATAACCTTCTTCCTAGCCCTTGCTACTCTTTTCCATTCAGTAGCATCCCGGGTGACTAAGAAACTTCCTGATTCTGTGTCCAATTCTGGCCACAACATTCCCAACCTGACACTTGAACCAATTTCTGAGGAGGAGTTACGTCCTCCTTCACCAGCTCCAAGGTTGACAGAGGCAGACCTTTTCTCATCTGTTCTGAAAAGGGTGGGCGAGCTTGAGGAGAAGGTGGACTTGCTGCAGGCAAAGCCATTCAAGATGCCTCATGAGAAAGAAGAGTTGCTGAATGCTGCTGTTTGTAGGGTGGATGCCTTAGAAGCAGAGCTAATTGCTACAAAGAAGGCTTTGCATGAAGCTTTAATGAGACAAGAAGAACTTCTTGCATACATAGACAGGCAAGAAGAAGCCAAGTCCCAGAAAAAGAAGTTTTGTTGGTGA 1872 0.4375 MSGPLDRFARPCFEGANHDERRERKSDFENSEDDRRTRIGNLKKKAINASSKFKHSLKKKGRRKSHDHLLSVSIKDVRDVEELQAVEAFRQALISDDLLPDRHDDYHMLLRFLKARKFDMEKAKHMWTEMIHWRKNFGTDTILEDFEFKELNEVLKYYPQGYHGVDKEGRPVYIERLGKVDSNKLVQVTTLDRYVKYHVQEFEKCFAFKFPACSVAAKRHIDSNTTLLDVQGVGFKNLTKNARDLIMRLQKIDGDNYPETLCQMFIINAGPGFRLLWNTVKTFLDPKTTSKIHVLGNKYQSKLLEIIDASELPEFLGGSCICADQGGCLKSDKGPWKDPNILKMVLSGEAQFSRRIVTVSNSDGRVITKEKPIYSVIKSSDTSTAESGSEVEEFTSPEVTRGYLHPRLTPVREEVRMAGKVNSAGGFSEYDEVPMVDKAVDAEWKKQLSLQDPCDSRGILSLPRAEKTPEGLCAKIWGVLITFFLALATLFHSVASRVTKKLPDSVSNSGHNIPNLTLEPISEEELRPPSPAPRLTEADLFSSVLKRVGELEEKVDLLQAKPFKMPHEKEELLNAAVCRVDALEAELIATKKALHEALMRQEELLAYIDRQEEAKSQKKKFCW* 624
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1103 623 SUPERFAMILY CRAL/TRIO domain 150 344 IPR036865 -
Vvi18g1103 623 Coils Coil 580 600 - -
Vvi18g1103 623 PRINTS Cellular retinaldehyde-binding protein signature 277 296 - -
Vvi18g1103 623 PRINTS Cellular retinaldehyde-binding protein signature 108 130 - -
Vvi18g1103 623 MobiDBLite consensus disorder prediction 12 35 - -
Vvi18g1103 623 CDD SEC14 151 318 IPR001251 -
Vvi18g1103 623 Pfam CRAL/TRIO, N-terminal domain 102 129 IPR011074 -
Vvi18g1103 623 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 150 324 IPR001251 -
Vvi18g1103 623 FunFam SEC14 cytosolic factor 138 350 - -
Vvi18g1103 623 Gene3D - 73 137 - -
Vvi18g1103 623 PANTHER CRAL-TRIO DOMAIN-CONTAINING PROTEIN YKL091C-RELATED 23 611 - -
Vvi18g1103 623 Pfam CRAL/TRIO domain 156 318 IPR001251 -
Vvi18g1103 623 SUPERFAMILY CRAL/TRIO N-terminal domain 80 146 IPR036273 -
Vvi18g1103 623 SMART CRAL_TRIO_N_2 105 130 IPR011074 -
Vvi18g1103 623 Gene3D - 138 348 IPR036865 -
Vvi18g1103 623 SMART sec14_4 150 321 IPR001251 -
Vvi18g1103 623 MobiDBLite consensus disorder prediction 1 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1103 Vvi-Chr18 11036188 11041914 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g1103 109 315 Acyl Lipid Metabolism Gene Families AT5G47730 31.100 2.76e-19 87.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1103 - - vvi:100248963 1246.11