Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1102 ATGGGCATTGGGAAGGATGGGAAATTACCATGGAATTTGCCCTCTGACCTCAAATTTTTCAAGGAGCTTACAATGACTACATCAGATCCTGGGAAAAAGAATGCAGTAGTAATGGGCAGGAAAACATGGGAAAGTATCCCCCTCAACTATCGACCTTTACCTGGTCGCCTTAATGTGGTGCTCACTCGGTCTGGGAGTTTTGATAATGCAACTGTAGAGAATGTTGTCATATGTGGAAGCATGCCGTCAGCTTTGAAATTACTGGCAGAATCTCCTTATTGTTTGTCAATAGACAAGGTGTTTGTTATAGGGGGTGGTCAGATATTAAGGGAAGCACTGAATGCTCCTGGTTGTGATGCCATCCACATCACTAAAATTGAGACAAGCATTGAATGTGACACTTTCATTCCCACTATTGACACTTCTGTTTTTCATCCATGGTATTCATCAGTACCATTGTTGGAAAACAACATTCTATATTCTTTTGTGACTTATGTTCGTGTGAGGAGTTCTGCCTTGGAATCTTTTGCTTTGAGCAGTGGGGTGAATTTTAATGGTGGTTCTGTTCCAAATAAGCTCAAGATACAGGGTTTTACCTTCTTGCCGAAGATGATTTTTGAGAGACATGATGAGTTTATGTATCTAAGACAACTAAAAGAAATTATCTCAAGTGGCGCTCATAAAGCTGACAAGACAGGGACTGGCACTGTATCAAAATTTGGTTGTCAGATGCGTTTCAATCTGCGTTTGTCTTTTCCGCTTCTTACCACCAAGAGAGTATTTTGGAGAGGTGTTGTTGAAGAGCTTTTGTGGTTTATTAGTGGTTCAACAAATGCAAAGGTGCTGCAGAAGAAAGACATTCATATATGGGATGGCAATGCATCCAGAGAGTACCTTGACAGGCAACTACTTGGCTATTGGAATCTTATTGGTTTGACAGATAGGGAAGAGGGGGACTTGGGACCCATATATGGGTTCCAGTGGAGACACTTTGGTGCCAGGTATACCAACATGCATGCTGACTACATGGGTAAAGGATTTGATCAGTTGCTTGATGTTATTGATAAGATCAAGAATAAACCTGATGACAGGCGTATTATACTCTCTTCTTGGAATCCATCTGATCTTAAATTGATGGCACTTCCGCCTTGCCACATGTTTGCACAATTTTATGTAGCCAATGGGGAGCTATCCTGTCAAATGTATCAGCGCTCTGCTGATATGGGTCTTGGTGTGCCATTTAACATTGCTTCTTATGCTTTATTGACATGCATGATTGCTCATGTTTGTGGTATTCTCCCTGGTGATTTCATCCTCATAATTGGTGATGCTCATATTTATAAAACTCATATTAGGCCTCTGGAGGAGCAGCTTCAGAAACTTCCTAAACCTTTCCCTATTTTGAAGATCAATCCACAGAAGAAGGATATTGAATCATTTGTGGCAGCTGATTTTGAGCTTATAGGTTATAATCCTCACCAGAAGATTGAAATGAAAATGTCAGTGTAG 1509 0.4069 MGIGKDGKLPWNLPSDLKFFKELTMTTSDPGKKNAVVMGRKTWESIPLNYRPLPGRLNVVLTRSGSFDNATVENVVICGSMPSALKLLAESPYCLSIDKVFVIGGGQILREALNAPGCDAIHITKIETSIECDTFIPTIDTSVFHPWYSSVPLLENNILYSFVTYVRVRSSALESFALSSGVNFNGGSVPNKLKIQGFTFLPKMIFERHDEFMYLRQLKEIISSGAHKADKTGTGTVSKFGCQMRFNLRLSFPLLTTKRVFWRGVVEELLWFISGSTNAKVLQKKDIHIWDGNASREYLDRQLLGYWNLIGLTDREEGDLGPIYGFQWRHFGARYTNMHADYMGKGFDQLLDVIDKIKNKPDDRRIILSSWNPSDLKLMALPPCHMFAQFYVANGELSCQMYQRSADMGLGVPFNIASYALLTCMIAHVCGILPGDFILIIGDAHIYKTHIRPLEEQLQKLPKPFPILKINPQKKDIESFVAADFELIGYNPHQKIEMKMSV* 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1102 502 CDD TS_Pyrimidine_HMase 214 455 IPR023451 -
Vvi18g1102 502 FunFam Possible thymidylate synthase 205 502 - -
Vvi18g1102 502 ProSitePatterns Dihydrofolate reductase (DHFR) domain signature. 2 24 IPR017925 GO:0004146
Vvi18g1102 502 Gene3D Thymidylate synthase/dCMP hydroxymethylase domain 203 502 IPR036926 -
Vvi18g1102 502 ProSitePatterns Thymidylate synthase active site. 364 392 IPR020940 GO:0004799|GO:0006231
Vvi18g1102 502 PRINTS Thymidylate synthase family signature 353 372 IPR000398 GO:0004799|GO:0006231
Vvi18g1102 502 PRINTS Thymidylate synthase family signature 397 423 IPR000398 GO:0004799|GO:0006231
Vvi18g1102 502 PRINTS Thymidylate synthase family signature 435 452 IPR000398 GO:0004799|GO:0006231
Vvi18g1102 502 PRINTS Thymidylate synthase family signature 252 273 IPR000398 GO:0004799|GO:0006231
Vvi18g1102 502 PRINTS Thymidylate synthase family signature 379 394 IPR000398 GO:0004799|GO:0006231
Vvi18g1102 502 PIRSF DHFR-TS 1 502 IPR012262 GO:0004146|GO:0004799|GO:0006730
Vvi18g1102 502 ProSiteProfiles Dihydrofolate reductase (DHFR) domain profile. 1 167 IPR001796 GO:0004146|GO:0046654
Vvi18g1102 502 SUPERFAMILY Thymidylate synthase/dCMP hydroxymethylase 163 502 IPR036926 -
Vvi18g1102 502 Pfam Dihydrofolate reductase 2 167 IPR001796 GO:0004146|GO:0046654
Vvi18g1102 502 NCBIfam thymidylate synthase 214 502 IPR000398 GO:0004799|GO:0006231
Vvi18g1102 502 Hamap Thymidylate synthase [thyA]. 211 502 IPR000398 GO:0004799|GO:0006231
Vvi18g1102 502 CDD DHFR 1 166 IPR001796 GO:0004146|GO:0046654
Vvi18g1102 502 SUPERFAMILY Dihydrofolate reductase-like 1 167 IPR024072 -
Vvi18g1102 502 Gene3D Dihydrofolate Reductase, subunit A 1 167 IPR024072 -
Vvi18g1102 502 PANTHER THYMIDYLATE SYNTHASE 1 14 502 IPR045097 GO:0016741
Vvi18g1102 502 Pfam Thymidylate synthase 214 502 IPR023451 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1102 Vvi-Chr18 11025678 11029366 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1102 K13998 - vvi:100255872 1001.89