Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1101 ATGTCAAAGAAAACTGTTGTGTCAGTGGAACTACTCTGTTCAAAGTGCAGACAGAAGGTCATGAAGTTAATTGGTGCAATAGAAGGGATAACTTCTGTTGTTCTTGACCCTTCAAAAAATACTGCCACAGTAATTGGAGAAGCTGATCCAGTGAAAATTATCAAACAGGTGAGGAAGTTCAAAAGATCTGCAATGATTGTGAGTATAGGTCCTCCCAAGGAAGAGAAAAAGGATTACACGTCCGTGTCCTCCCAAGTCCATATTCATAGCCTTCCCAAGATCTGTCAGGGTTGTGATGCCTGGTATGTGGTCGGTGAAGATTATCATATATGTTCAATTCTGTAA 345 0.4058 MSKKTVVSVELLCSKCRQKVMKLIGAIEGITSVVLDPSKNTATVIGEADPVKIIKQVRKFKRSAMIVSIGPPKEEKKDYTSVSSQVHIHSLPKICQGCDAWYVVGEDYHICSIL* 115
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1101 114 Gene3D - 1 75 - -
Vvi18g1101 114 SUPERFAMILY HMA, heavy metal-associated domain 2 66 IPR036163 GO:0046872
Vvi18g1101 114 ProSiteProfiles Heavy-metal-associated domain profile. 2 65 IPR006121 GO:0046872
Vvi18g1101 114 PANTHER COPPER TRANSPORT PROTEIN FAMILY-RELATED 3 78 - -
Vvi18g1101 114 CDD HMA 13 59 IPR006121 GO:0046872
Vvi18g1101 114 Pfam Heavy-metal-associated domain 7 61 IPR006121 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1101 Vvi-Chr18 11019643 11020213 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1101 - K10572 vri:117906194 218.779