Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1092 ATGGATTCTTGCTGTGCGAAAGTGAAGGGCAATGTACATCCGGTGCCAGTTAGAAACAGAGGTGTTGGTAAAGTAGGTAGTGGGTTTTGGGGGGAGAGGATTGGGACCAGTTTGTGGAGCAGTAGTTTCAGCAATCGACAATGGAAGAGCTTGAGAAAGGAAAGAAAGGCCAAAACGATTAATCGCGCTGTTCTTACACCGGATGTTGACCAAGAGAATCTGATATTTGAAGGACCAGTTTTTGAGAAACAACATGCCGACCCAAGTAGCGTGGCTGCAATCATACTGGGTGGAGGTGCTGGGACTCGATTATTTCCTCTTACCAGTAGAAGGGCGAAACCAGCTGTTCCAATTGGAGGTTGTTACAGGCTTATTGATGTCCCTATGAGTAATTGCATCAACAGTGGCATAAGAAAGATATTCATCTTGACACAGTTCAATTCTGCATCCCTCAATAGGCATATTGCTCGCATATATAATTTTGGAAACGGGGTGAATTTTGGAGATGGATTTGTGGAGGTTCTGGCTGCCACTCAAACACCAGGGGAAGCAGGACAGAAGTGGTTCCAAGGAACAGCAGATGCTGTGAGGCAATTTATATGGGTTTTTGAGGATGCTAAGAACAAGAATGTGGAGCATATATTGATCTTGTCTGGTGATCATCTCTATAGGATGGACTATATGGATTTTGTGCAGAAGCATATTGACTCGAATGCTGATATTACAGTTTCATGCGTTCCCATGGATGACAGCCGTGCGTCAGACTATGGATTGATGAAGATTGACAATACAGGACGAATCATCCAATTTTCTGAAAAACCAAAGGGCCCCAATCTGAAAGCAATGAAAGTTAATACCACCCTCCTAGGTCTTTCTGAGAAGGAAGCAGAGAAGTGTCCTTATATTGCATCAATGGGTGTATATGTATTTAGAACTGATGTCCTGCTAAAGCTTTTAACACGGAAGTACCTATCATGCAATGACTTTGGCTCTGAAATCATTCCTTTGGCTGTGAAAGACCACAATGTTCAAGCATACTTATTCAATGACTATTGGGAGGACATTGGAACAATAAAATCTTTCTTTGATGCCAACTTGGCTCTTACAGAACAGGTTTGTATTTTTATATGCATGTATTCTTATTGA 1146 0.4206 MDSCCAKVKGNVHPVPVRNRGVGKVGSGFWGERIGTSLWSSSFSNRQWKSLRKERKAKTINRAVLTPDVDQENLIFEGPVFEKQHADPSSVAAIILGGGAGTRLFPLTSRRAKPAVPIGGCYRLIDVPMSNCINSGIRKIFILTQFNSASLNRHIARIYNFGNGVNFGDGFVEVLAATQTPGEAGQKWFQGTADAVRQFIWVFEDAKNKNVEHILILSGDHLYRMDYMDFVQKHIDSNADITVSCVPMDDSRASDYGLMKIDNTGRIIQFSEKPKGPNLKAMKVNTTLLGLSEKEAEKCPYIASMGVYVFRTDVLLKLLTRKYLSCNDFGSEIIPLAVKDHNVQAYLFNDYWEDIGTIKSFFDANLALTEQVCIFICMYSY* 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1092 381 ProSitePatterns ADP-glucose pyrophosphorylase signature 3. 303 313 IPR005836 GO:0005978|GO:0008878
Vvi18g1092 381 PANTHER GLUCOSE-1-PHOSPHATE ADENYLYLTRANSFERASE-RELATED 48 375 IPR011831 GO:0005978|GO:0008878
Vvi18g1092 381 ProSitePatterns ADP-glucose pyrophosphorylase signature 2. 188 196 IPR005836 GO:0005978|GO:0008878
Vvi18g1092 381 SUPERFAMILY Nucleotide-diphospho-sugar transferases 91 371 IPR029044 -
Vvi18g1092 381 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 80 375 IPR029044 -
Vvi18g1092 381 Pfam Nucleotidyl transferase 93 370 IPR005835 GO:0009058
Vvi18g1092 381 FunFam Glucose-1-phosphate adenylyltransferase 77 380 - -
Vvi18g1092 381 ProSitePatterns ADP-glucose pyrophosphorylase signature 1. 97 116 IPR005836 GO:0005978|GO:0008878
Vvi18g1092 381 CDD ADP_Glucose_PP 93 355 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1092 Vvi-Chr18 10942645 10945108 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1092 K00975 - vvi:100241983 745.732