Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1087 ATGGCTTGTTACGAGACTCCTCCAGCGCGGTTACGTGGCTCGGGTCACTGTCCGCGATGGCAAGAACTTGAGGAAGGTGCAGCATTTGCTGGACTTGCCAAATGCAGAGACGTAGTTATCACTATGGAAGGCTTCGATGAGGCCATTCAGGGGTGCACTGGTGTTTTCCATCTAGCCACGCCCATGGATTTTGAGTCCAAAGACCCTGAGAATGAAGTGATAAGGCCAACGATTAATGGGATGTTGGGCATAATGAAGTCATGCGCTAAGGCGAAAACGGTTTGTAGGCTTGTATTCACATCCTCCGCAGGAACTGTCTGCATGCAACAACACAAACAGTCGGCCTACGATGAAAGATGCTGGAGTGATGTTGAATTTTGCATGGCTACGAAGATGACTGGATGGATGTACTTCGTCTCCAAGACATGA 429 0.4918 MACYETPPARLRGSGHCPRWQELEEGAAFAGLAKCRDVVITMEGFDEAIQGCTGVFHLATPMDFESKDPENEVIRPTINGMLGIMKSCAKAKTVCRLVFTSSAGTVCMQQHKQSAYDERCWSDVEFCMATKMTGWMYFVSKT* 143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1087 142 Pfam 3-beta hydroxysteroid dehydrogenase/isomerase family 41 116 IPR002225 GO:0003854|GO:0006694|GO:0016616
Vvi18g1087 142 Gene3D - 31 142 - -
Vvi18g1087 142 PANTHER NAD DEPENDENT EPIMERASE/DEHYDRATASE 41 142 - -
Vvi18g1087 142 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 42 141 IPR036291 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1087 Vvi-Chr18 10905350 10906204 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g1087 45 142 Miscellaneous Gene Families AT5G19440 45.545 1.18e-20 84.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1087 K13082 - pop:7454367 171.4