Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1084 ATGTTCAGGAACCAGTACGACACGGACGTGACCACATGGAGCCCAGCCGGCAGACTCTTTCAAGTGGAGTATGCCATGGAAGCCGTGAAGCAAGGGTCTGCTGCCATTGGCCTCCGATCCAAGACTCATGTCGTCTTGGCTTGTGTCAACAAGGCTAACTCCGAGCTCTCTTCTCACCAGAAGAAGATCTTCAAGGTCGACGACCACATCGGAGTAGCCATCGCAGGCCTCACCGCCGATGGCAGAGTCCTCTCTCGGTACATGCGATCCGAATGCATCAACTACAGCTTCACTTACGAGTCTCCGCTTCCTGTTGGTCGACTGGTTGTTCAGCTTGCCGACAAGGCTCAGGTTTGCACCCAAAGGTCCTGGAAACGGCCCTATGGTGTTGGTCTGCTTGTAGCTGGCTTGGATGAATCGGGGGCTCACCTCTATTACAACTGCCCAAGTGGGAATTACTTTGAATATCAGGCTTTTGCTATTGGATCCCGCTCACAGGCTGCAAAGACGTATTTGGAACGCAGGTTTGGGACGTTCCAAAACTCTTCACGAGAAGATCTTATCAAGGATGCACTTTTTGCAATAAGAGAAACCTTGCAAGGAGAAAAGCTTAAGAGCTCCATTTGCACAGTCACAGTGCTTGGAGTGGGGGAGCCTTTCCATATATTGGATCAGGAAACAGTGCAGGGGTTAATTAATGCATTTGAGATGGCAGGGGAGGAGGCTCCTGCTGCGGACCAGGGTGCTGCTGGTGAAGAGGGTGCTGCTGGTGAAGTGGTTGCTGCCGCAGAAGAGGGTGCTGCTCCTGAAGAGGGTGCTGCTACTGAAGAGGGTGCTGCTCCAATGGATATCTGA 855 0.524 MFRNQYDTDVTTWSPAGRLFQVEYAMEAVKQGSAAIGLRSKTHVVLACVNKANSELSSHQKKIFKVDDHIGVAIAGLTADGRVLSRYMRSECINYSFTYESPLPVGRLVVQLADKAQVCTQRSWKRPYGVGLLVAGLDESGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERRFGTFQNSSREDLIKDALFAIRETLQGEKLKSSICTVTVLGVGEPFHILDQETVQGLINAFEMAGEEAPAADQGAAGEEGAAGEVVAAAEEGAAPEEGAATEEGAAPMDI* 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1084 284 Pfam Proteasome subunit 29 213 IPR001353 GO:0005839|GO:0051603
Vvi18g1084 284 ProSitePatterns Proteasome alpha-type subunits signature. 6 28 IPR000426 GO:0006511|GO:0019773
Vvi18g1084 284 PANTHER PROTEASOME SUBUNIT ALPHA/BETA 10 232 - -
Vvi18g1084 284 MobiDBLite consensus disorder prediction 264 284 - -
Vvi18g1084 284 ProSiteProfiles Proteasome alpha-type subunit profile. 21 232 IPR023332 -
Vvi18g1084 284 FunFam Proteasome subunit alpha type-6 2 232 - -
Vvi18g1084 284 SMART Proteasome_A_N_2 6 28 IPR000426 GO:0006511|GO:0019773
Vvi18g1084 284 Pfam Proteasome subunit A N-terminal signature 6 28 IPR000426 GO:0006511|GO:0019773
Vvi18g1084 284 SUPERFAMILY N-terminal nucleophile aminohydrolases (Ntn hydrolases) 4 235 IPR029055 -
Vvi18g1084 284 CDD proteasome_alpha_type_1 6 215 IPR035144 GO:0019773
Vvi18g1084 284 Gene3D Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 2 231 IPR029055 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1084 Vvi-Chr18 10874671 10879213 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1084 K02725 - vvi:100257364 491.5