Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1081 ATGGGAACCCTTGGAAAAGCTATCTACACTGTCGGATTCTGGATTCGGGAGACCGGCCAGGCCATTGATCGTCTCGGTTGCCGTCTCCAAGGAAATTACTACTTCCTAGAACAAATATCTAGGCATCGGACTCTCATGAACTTATTTGACAAAGCGCCAATTGTTGATAAGGATGCATTTGTGGCTCCAAGTGCTTCTATCATTGGAGATGTTCAAGTGGGACGAGGGTCATCCATTTGGTATGGGTGTGTTTTGAGAGGTGATGTGAACAGCATCAGTGTTGGATCTGGAACTAATATACAGGATAACTCCCTTGTGCACGTGGCAAAATCTAATCTAAGTGGGAAGGTGTTACCAACTATCATTGGGGACAACGTCACTGTAGGTCACAGTGCCGTTTTACATGGCTGTACCGTTGAGGATGAGGCCTTTGTTGGGATGGGAGCAACTTTGCTTGATGGGTCGATTGTTGAGAAGCATGCCATGGTTGCAGCTGGAGCCCTTGTGAGACAGAACACAAGAATTCCCTGTGGGGAGGTATGGGGAGGCAATCCAGCAAAGTTTCTGAGAAAGCTCACTGATGAAGAGATAGCTTTTATCTCCCAGTCAGCCATCAATTATTCCAACCTTGCACAGGTCCATGCAGCTGAAAATGCAAAGCCTTTTGATGAGATTGAGTTTGAGAAGGTACTTCGCAAGAAGTTTGCTCGTCGGGATGAGGACTATGACTCAATGCTTGGTGTAGTTCGTGAAACTCCACCAGAACTTATTCTTCCGGATAACATTCTGCCAGATAAAGCACCGAAAGTTTCTCAGTGA 819 0.4615 MGTLGKAIYTVGFWIRETGQAIDRLGCRLQGNYYFLEQISRHRTLMNLFDKAPIVDKDAFVAPSASIIGDVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKSNLSGKVLPTIIGDNVTVGHSAVLHGCTVEDEAFVGMGATLLDGSIVEKHAMVAAGALVRQNTRIPCGEVWGGNPAKFLRKLTDEEIAFISQSAINYSNLAQVHAAENAKPFDEIEFEKVLRKKFARRDEDYDSMLGVVRETPPELILPDNILPDKAPKVSQ* 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1081 272 PANTHER DYNACTIN SUBUNIT P25 20 239 - -
Vvi18g1081 272 FunFam Carnitine operon protein CaiE 44 219 - -
Vvi18g1081 272 SUPERFAMILY Trimeric LpxA-like enzymes 47 212 IPR011004 -
Vvi18g1081 272 CDD LbH_gamma_CA_like 55 212 IPR047324 -
Vvi18g1081 272 Gene3D Hexapeptide repeat proteins 43 222 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1081 Vvi-Chr18 10857876 10863153 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1081 K01726 - vvi:100247109 545.043