Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vvi18g1072 | ATGCAAGGAATTGGCCGAGCAACACGATCTTGCCAGGAAACGCTTAAGCTTGCAATTCTACAGCACTGCCATGGAAGGAGTACAGCTGGGAGGAAAAATGTATTTTCACGTCATGAATGTGTCACCACCTCCAACCCCACCATGGAGCAGAAGGGATTGGAGAATACAACAGTGGCAGAAGTACTGATGACAAAGGGAGAAGAGAAAAGTGGATCTTGGCTCTGGTGCCGCACCAATGACACTGTTTATGATGCTGCAAAGCATATGGCAGAAAATAACATTGGGTCTCTAGTGGTTCTAAAGCCAGGAGAGCCAAAACATATTGCTGGCATTTTCACAGAAAGAGACTACATGAGGAAGATAATAGCACATGGAAGATCCTCCAAAGACACTAAAGTTGGGGAAATCATGACTGATGAGAACAAGTTGGTGACTGTGAGCTCTGATACAAACATTCTCCAAGCAATGCAGCTTTTGACAGAGTATCAGATAAGGCATGTACCAGTGATAGATGGAAAGATAGTAGGCATGATTTCCATAGTAGACATTGTCCGAGCGGTGGTGGAGCTGCAAAGTGGGGAAGTGAAGAGACTGAACGAGTTCATTAAAGGAGATTACTATTGA | 624 | 0.4439 | MQGIGRATRSCQETLKLAILQHCHGRSTAGRKNVFSRHECVTTSNPTMEQKGLENTTVAEVLMTKGEEKSGSWLWCRTNDTVYDAAKHMAENNIGSLVVLKPGEPKHIAGIFTERDYMRKIIAHGRSSKDTKVGEIMTDENKLVTVSSDTNILQAMQLLTEYQIRHVPVIDGKIVGMISIVDIVRAVVELQSGEVKRLNEFIKGDYY* | 208 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vvi18g1072 | 207 | ProSiteProfiles | CBS domain profile. | 137 | 195 | IPR000644 | - | |
| Vvi18g1072 | 207 | Pfam | CBS domain | 133 | 188 | IPR000644 | - | |
| Vvi18g1072 | 207 | Pfam | CBS domain | 74 | 121 | IPR000644 | - | |
| Vvi18g1072 | 207 | ProSiteProfiles | CBS domain profile. | 63 | 128 | IPR000644 | - | |
| Vvi18g1072 | 207 | CDD | CBS_pair_bac_euk | 76 | 185 | IPR044725 | - | |
| Vvi18g1072 | 207 | SUPERFAMILY | CBS-domain pair | 54 | 199 | IPR046342 | - | |
| Vvi18g1072 | 207 | Gene3D | - | 51 | 206 | IPR046342 | - | |
| Vvi18g1072 | 207 | PANTHER | CBS DOMAIN-CONTAINING PROTEIN CBSX3, MITOCHONDRIAL | 6 | 206 | - | - | |
| Vvi18g1072 | 207 | SMART | cbs_1 | 72 | 122 | IPR000644 | - | |
| Vvi18g1072 | 207 | SMART | cbs_1 | 142 | 188 | IPR000644 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vvi18g1072 | Vvi-Chr18 | 10823306 | 10824330 | Dispersed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vvi18g1072 | - | - | vvi:100245450 | 415.616 |