Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vvi18g1071 | ATGAATTTGAAGCACTTGCTCTCCAGGCAGACAATTAAAGGCTTATCAAGATTCAATGGAAGAATACTATCTCCGTACTCCTATATTTATAAGGATTCTTTCGCTATCACGACCCCCATTTCTCATTCAATTTATTCATCAGGCAGTTATGATTCTACTTTTCAGAACCTTGCATACCCAAAACTGGCTCCGTCCTCAAATAGATATGCTCATTCTCTTCCAGAAACTAAACTGGGCGGCTCAGGCACGGACCCAGAACTTGAATCTGATGATTCTGACGATGGAACCATGAATGAGTTCCTTTCCCGATTTGTCTGGATAATGCGTGGAAAGCTCATGGAAGTATACACTGGCTGCGACAAGCAGACAATTGATGGGATGCTTTTGATCATTGTTCGCAAGGTTGTATCAGAGATGGAGAAGGGTGGCCTTGAGCAGATGCTTAGTGCAGCAGTGGCTGCACCATCTCAGGATTTTAGTGAGGATTTATGGAAGACAGTTTGGGAGGTTAGCAATTTGGTATTGGATGACATGAAGAAGGCAAGAAACAAGGAAAAAATGAAGGGTTTTCTCCAATCTGAAGAAGTTAAGGAAATGTCTAGATTTGCAGGTGAAATAGGCATTAGAGGGGATATGCTGAGGGAGCTCAGGTTCAAATGGGCTCGAGAGAAAATGGAGGAAAGTGAGTTTTATCAGAGTTTGGACCATCTCCGAGAAGAAGCCCAGGCTGAAGAAGGAGAAGAAGCAGTAGGTAATGAGGAGGTTATTGGGGATGACCTTGTAGAGGATGAAAAGAAAGAAAAGGTTGTATCTCTCCCCAAGAGACATGGGAAGATTAGATACGAGATTTATGGTCTTGATCTCTCTGATCCTAAATGGACAGAAGTGGCTGACAAAGTCCATGAGAGAGAAGAAATTATTTGGCCCCAGGAACCCAAACCAATATCAGGAAAATGCAAATTGATAACTGAGAAAATCCTTAATATGAAAGAGGAGGATGACCCTTCTCCCTTGTTGGATGAATGGGCAGAGCTTCTCCAGCCTAGCAGGATTGACTGGATTACTTTACTTGATAGATTGAAAGAAAATAATAGTCATCTATACTTTAAGGTAGCAGAACTTGTTTTGAGCAAAAAGTCTTTCCAAACTAATATTCGTGACTATTCAAAGCTTATTGATGTGCATGCTAAGGAGAATCGCGTGGAAGATGCTGAGAGGATTCTTAAGAAGATGAATGAAAATGATATCTTACCTGATATTCTAACATCCACTGTTTTGGTTCACATGTACAGCAAGGCAGGCAACCTTGAGCGTGCAAAAGAAGCATTTGAAGGCTTGAGGAGCCAAGGCTTCCAACCAGACACAAGGGTCTACAACTCAATGATCATGGCATATGTGAATGCTGGCCAACCCAAGTTGGGTGAGTCACTCATGAGAGAGATGGAGGCAAGGGATATCAAACCCACAAAGGAGATTTACATGTCATTGCTTCAGTCATTTGCCCAACGTGGTGACATTGGTGGAGCCCAACGTATCTCAACCACCATGCAGTTTGCTGGGTTCCAGCCTAGTTTGGAGTCTTGTACATTGCTTGTTGAGGCATATGGGCAAGCTGGCGATCCTGATCAGGCAAGGAACAGTTTTGACTATATGATAAAAGTTGGACACAGGCCTGACGACAGGTGCACTGCTAGCATGATTGCAGCTTATGAGAAAGGAAATTTATTGGATAAGGCTTTGAATCTTCTATTGCAGCTTGAGAAGGATGGTTTTGAGCCGGGGGTTGCTACATATGTTGTTCTGGTGGATTGGCTAGGGAAGATGCAGCTGGTTGATGAAGCTGAGCAACTACTGGGCAAGATAGCTGAGCAGGGTGAGGCTCCTCCTTTAAAGTTTCATGTAAGCCTTTGTGATATGTATTCAAGGGCCGGGGTTGAGAAGAAGGCTCTTCAAGCTCTAGGGGTTGTGGAGGCTAAGAAGGAGCAGTTGAACCCTGAGGATTTTGAGAGGATTATAAAGGGGCTTATAGCTGGTGGGTTTGTGCAGGATGCTCGAAGGATACATGGGGTGATGGAGACTCAGGGGTTTACTGCATCTGAGCAGCTTAAGATCATCCTTATGTCATCTCAAGCCGTTGGTCGTGAAAGACCAACATTGCGATAG | 2163 | 0.4378 | MNLKHLLSRQTIKGLSRFNGRILSPYSYIYKDSFAITTPISHSIYSSGSYDSTFQNLAYPKLAPSSNRYAHSLPETKLGGSGTDPELESDDSDDGTMNEFLSRFVWIMRGKLMEVYTGCDKQTIDGMLLIIVRKVVSEMEKGGLEQMLSAAVAAPSQDFSEDLWKTVWEVSNLVLDDMKKARNKEKMKGFLQSEEVKEMSRFAGEIGIRGDMLRELRFKWAREKMEESEFYQSLDHLREEAQAEEGEEAVGNEEVIGDDLVEDEKKEKVVSLPKRHGKIRYEIYGLDLSDPKWTEVADKVHEREEIIWPQEPKPISGKCKLITEKILNMKEEDDPSPLLDEWAELLQPSRIDWITLLDRLKENNSHLYFKVAELVLSKKSFQTNIRDYSKLIDVHAKENRVEDAERILKKMNENDILPDILTSTVLVHMYSKAGNLERAKEAFEGLRSQGFQPDTRVYNSMIMAYVNAGQPKLGESLMREMEARDIKPTKEIYMSLLQSFAQRGDIGGAQRISTTMQFAGFQPSLESCTLLVEAYGQAGDPDQARNSFDYMIKVGHRPDDRCTASMIAAYEKGNLLDKALNLLLQLEKDGFEPGVATYVVLVDWLGKMQLVDEAEQLLGKIAEQGEAPPLKFHVSLCDMYSRAGVEKKALQALGVVEAKKEQLNPEDFERIIKGLIAGGFVQDARRIHGVMETQGFTASEQLKIILMSSQAVGRERPTLR* | 721 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vvi18g1071 | 720 | PANTHER | OS07G0661900 PROTEIN | 107 | 707 | - | - | |
| Vvi18g1071 | 720 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 559 | 593 | IPR002885 | - | |
| Vvi18g1071 | 720 | Pfam | Pentatricopeptide repeat domain | 406 | 467 | IPR002885 | - | |
| Vvi18g1071 | 720 | Pfam | Pentatricopeptide repeat domain | 512 | 558 | IPR002885 | - | |
| Vvi18g1071 | 720 | Coils | Coil | 394 | 414 | - | - | |
| Vvi18g1071 | 720 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 524 | 558 | IPR002885 | - | |
| Vvi18g1071 | 720 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 594 | 628 | IPR002885 | - | |
| Vvi18g1071 | 720 | Gene3D | Tetratricopeptide repeat domain | 336 | 489 | IPR011990 | GO:0005515 | |
| Vvi18g1071 | 720 | NCBIfam | pentatricopeptide repeat | 457 | 489 | IPR002885 | - | |
| Vvi18g1071 | 720 | NCBIfam | pentatricopeptide repeat | 388 | 420 | IPR002885 | - | |
| Vvi18g1071 | 720 | NCBIfam | pentatricopeptide repeat | 424 | 455 | IPR002885 | - | |
| Vvi18g1071 | 720 | NCBIfam | pentatricopeptide repeat | 527 | 559 | IPR002885 | - | |
| Vvi18g1071 | 720 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 384 | 418 | IPR002885 | - | |
| Vvi18g1071 | 720 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 454 | 488 | IPR002885 | - | |
| Vvi18g1071 | 720 | Gene3D | Tetratricopeptide repeat domain | 499 | 715 | IPR011990 | GO:0005515 | |
| Vvi18g1071 | 720 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 419 | 453 | IPR002885 | - | |
| Vvi18g1071 | 720 | Pfam | PPR repeat | 565 | 591 | IPR002885 | - | |
| Vvi18g1071 | 720 | Pfam | PPR repeat | 597 | 625 | IPR002885 | - | |
| Vvi18g1071 | 720 | MobiDBLite | consensus disorder prediction | 73 | 95 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vvi18g1071 | Vvi-Chr18 | 10818354 | 10821881 | Dispersed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Vvi18g1071 | 364 | 719 | Glycosyltransferase | AT1G05670 | 21.675 | 1.74e-23 | 104 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vvi18g1071 | - | - | vvi:100267767 | 1401.73 |