Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1065 ATGATGGGCGAGCACGCTCAGACTGTGCCTAAGCTGCAGCCCGATAATGAAAGTGCTACGGCCACCTCCAACGCCGCCGACACGACTGCCATCCAAATCGTTTCGACATCCACCGAATTAGCGACCATTGCTCCTCCTGAAAATCAATCTTCTGCTTCAAACATTCCTTTTCGTCCAAGAAAGATCCGAAAAATTTCTCCAGATAACTCCGAATCGAAACCCGCCGGAGATTCCAAGACTGCAGGGAAAGGTGCCAAGAACAAGCTTGTTCCTCAACGAGTTCCGGCGGTACCGAACATGGTGGCGAGGGCGCTATCTTGCGAAGGCGAGATCGAAATCGCGCTCCGACATCTTCGAAACGCGGATCCGCACCTGGCTCCGTTAATTGATCTCCACCCGCCTCCAACATTCGACTCTTTCCACACCCCGTTTCTTGCCCTAACAAAGAGCATTCTCTATCAGCAGCTCGCCTACAAGGCCGGCACCTCGATCTACACTCGATTCGTTGGTCTCTGTGGCGGCGAAGCCGGAGTATTGCCGGAAACCGTTCTTGCCCTAACCCCTCACCAGCTTCGGCAAATCGGAGTATCGGGGCGTAAGGCTAGTTATCTACATGACCTTGCGAGGAAATACCAAAATGGCATCTTGTCCGATACAGGGATTATTACAATGGATGATAAGTCCCTTTTCACAATGCTCACGATGGTTAATGGCATTGGGTCTTGGTCTGTTCATATGTTCATGATTTTCTCACTCCATAGACCGGATGTTCTTCCTGTAAACGATCTTGGTGTCCGCAAAGGGGTGCAGCTCCTTTATGGCCTTGAAGAGTTGCCTAGGCCGTCCCAGATGGAACAGTTGTGCGAGAAGTGGAGGCCGTATAGGTCAGTAGCATCCTGGTATATCTGGAGGTTTGTTGAAGGCAAGGGAGCTCCTTCTAGCGCGGCGGCTGTTGCTGGGGGTCCTAGTCTGCAGCAGCAGCAGCAGCAGCAAGAGCAGCAACAACAACATCAGCAGCAACAACATCAGCAGCAGTTTCTCGATCCAATCAATGGCATTCTAAACCTCGGGGCCTGTGCTTGGGGACAATGA 1092 0.5192 MMGEHAQTVPKLQPDNESATATSNAADTTAIQIVSTSTELATIAPPENQSSASNIPFRPRKIRKISPDNSESKPAGDSKTAGKGAKNKLVPQRVPAVPNMVARALSCEGEIEIALRHLRNADPHLAPLIDLHPPPTFDSFHTPFLALTKSILYQQLAYKAGTSIYTRFVGLCGGEAGVLPETVLALTPHQLRQIGVSGRKASYLHDLARKYQNGILSDTGIITMDDKSLFTMLTMVNGIGSWSVHMFMIFSLHRPDVLPVNDLGVRKGVQLLYGLEELPRPSQMEQLCEKWRPYRSVASWYIWRFVEGKGAPSSAAAVAGGPSLQQQQQQQEQQQQHQQQQHQQQFLDPINGILNLGACAWGQ* 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1065 363 MobiDBLite consensus disorder prediction 40 90 - -
Vvi18g1065 363 SMART endo3end 152 307 IPR003265 GO:0006284
Vvi18g1065 363 Pfam HhH-GPD superfamily base excision DNA repair protein 149 292 IPR003265 GO:0006284
Vvi18g1065 363 MobiDBLite consensus disorder prediction 314 344 - -
Vvi18g1065 363 MobiDBLite consensus disorder prediction 11 28 - -
Vvi18g1065 363 SUPERFAMILY DNA-glycosylase 133 308 IPR011257 GO:0003824|GO:0006281
Vvi18g1065 363 MobiDBLite consensus disorder prediction 319 344 - -
Vvi18g1065 363 CDD ENDO3c 144 305 IPR003265 GO:0006284
Vvi18g1065 363 Gene3D - 116 304 - -
Vvi18g1065 363 FunFam Probable DNA-3-methyladenine glycosylase 2 240 304 - -
Vvi18g1065 363 Gene3D Hypothetical protein; domain 2 141 254 - -
Vvi18g1065 363 FunFam DNA-3-methyladenine glycosylase II 140 254 - -
Vvi18g1065 363 PANTHER DNA-3-METHYLADENINE GLYCOSYLASE 19 316 - -
Vvi18g1065 363 MobiDBLite consensus disorder prediction 40 56 - -
Vvi18g1065 363 MobiDBLite consensus disorder prediction 1 28 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1065 Vvi-Chr18 10767233 10780095 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1065 K01247 - vvi:100243712 670.618