Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1063 ATGGACACGGAGATTCCCGGCGGTGGAGCTGCGGTGGGGGTTCAGATCCATTGCAGTCGGAGATTGCCGGATTTCCTACAGAGCGTCAACCTAAAGTACGTAAAATTAGGTTACCACTACCTGGTCTCTAACCTTCTGACCCTATGTTTGGTGCCTCTTATGATCGGAATCTTGATCCAGGCCTCCCAAACCAACCCTGACGATCTACGCCACCTATGGCTTCATCTCCAGTACAATCTAGTGAGTGTCATCATATGCTCCGCTATTCTAGTCTCCGCAACAACCGTCTACATCACGAGACGTCCTCGTCCCGTTTTCCTCGTCGATTACGCCTGCTACCGGCCTCCCGATCACCTCCAAGTCCGATTCCATCAGTTCATGGACCACTCCAAACTCACCGGCGACTTCACCGAGTCGACGCTCGAGTTCCAGCGCAAGATCTTGGAGCGCTCTGGCCTCGGGGAAGAGACTTATGTGCCTCAAGCAATGCACTACCTCCCCCCGCGCCCCTCGATGTCGGCGGCCCGAGAGGAGGCTGAGCAGGTCATGTTTGGTGCTTTGGATGCTCTGTTTTCTGATACTTGTATTAAGCCTAAGGACATCGGCATTCTTGTTGTGAACTGTAGTTTGTTTAATCCCACGCCTTCCCTCTCTGCCATGATTGTGAATAAGTACAAATTGAGGGGTAATATTAGGAGTTTTAATCTAGGGGGTATGGGATGTAGTGCTGGAGTCATTGCAATTGATCTCGCTAGTGACTTGTTGCAAGTTCATAGGAATACTTATGCTGTTGTTGTCAGCACTGAGAACATCACTCAAAATTGGTATTTTGGGAATGACAGGTCCATGTTGATACCCAATTGTTTGTTTCGGGTTGGAGGTGCTGCCATTTTACTTTCTAATAGGTCTAGGGACAGGAGGCGGGCCAAGTACAGGCTTGTTCATGTCGTGAGGACACATCGTGGAGCTGATGATAAGGCATTTAGCTGTGTTTACCAGAAGCAGGATGATGTAGGGAAGACGGGTGTTTCACTGTCAAAAGATCTCATGGCAATTGCAGGAGGGGCGCTTAAGACCAATATAACTACACTGGGTCCTCTTGTACTCCCAATTAGTGAGCAGCTGCTCTTCTTTGCAACTCTTCTGGTTAAGAAGCTTTTGAAATCAAATGCTAAGCCTTATATACCAGATTTCAAGCTGGCATTCAACCATTTCTGCATACATGCTGGAGGAAGGGCTGTTATTGATGAGCTGGAGAAGAATCTGCAATTGCTACCAGAACATGTGGAGGCATCTCGGATGACTCTTCACCGTTTTGGAAACACTTCATCAAGCTCTATCTGGTATGAGTTGGCCTATACTGAGGCTAAGGGGAGGATGCGAAAGGGTAATCGTGTCTGGCAGATTGCTTTTGGGAGCGGTTTCAAATGTAACAGTGCTGTGTGGGAGGCACTCCGGCATGTGCAGCCCTCTCGGAATGGCCCTTGGGAAGATTGCATTGACAAGTATCCAGTGAAAGTAGTCACCTAG 1530 0.4869 MDTEIPGGGAAVGVQIHCSRRLPDFLQSVNLKYVKLGYHYLVSNLLTLCLVPLMIGILIQASQTNPDDLRHLWLHLQYNLVSVIICSAILVSATTVYITRRPRPVFLVDYACYRPPDHLQVRFHQFMDHSKLTGDFTESTLEFQRKILERSGLGEETYVPQAMHYLPPRPSMSAAREEAEQVMFGALDALFSDTCIKPKDIGILVVNCSLFNPTPSLSAMIVNKYKLRGNIRSFNLGGMGCSAGVIAIDLASDLLQVHRNTYAVVVSTENITQNWYFGNDRSMLIPNCLFRVGGAAILLSNRSRDRRRAKYRLVHVVRTHRGADDKAFSCVYQKQDDVGKTGVSLSKDLMAIAGGALKTNITTLGPLVLPISEQLLFFATLLVKKLLKSNAKPYIPDFKLAFNHFCIHAGGRAVIDELEKNLQLLPEHVEASRMTLHRFGNTSSSSIWYELAYTEAKGRMRKGNRVWQIAFGSGFKCNSAVWEALRHVQPSRNGPWEDCIDKYPVKVVT* 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1063 509 PANTHER 3-KETOACYL-COA SYNTHASE 78 506 IPR012392 GO:0006633|GO:0016020|GO:0016747
Vvi18g1063 509 SUPERFAMILY Thiolase-like 93 309 IPR016039 GO:0016746
Vvi18g1063 509 Gene3D - 118 484 IPR016039 GO:0016746
Vvi18g1063 509 FunFam 3-ketoacyl-CoA synthase 115 484 - -
Vvi18g1063 509 Pfam FAE1/Type III polyketide synthase-like protein 97 386 IPR013601 GO:0006633|GO:0016020|GO:0016747
Vvi18g1063 509 PIRSF Very_long_ch_3-ktacl-CoA_syn 24 509 IPR012392 GO:0006633|GO:0016020|GO:0016747
Vvi18g1063 509 SUPERFAMILY Thiolase-like 314 483 IPR016039 GO:0016746
Vvi18g1063 509 Pfam 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal 403 483 IPR013747 -
Vvi18g1063 509 CDD CHS_like 87 482 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1063 Vvi-Chr18 10749966 10751495 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g1063 15 507 Miscellaneous Gene Families AT1G19440 82.759 0.0 877
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1063 K15397 - vvi:100260817 1030.01