Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1059 ATGGGAGGGAACCACAAGAGTGTGGATGATGTAACGTTGCAGTTTCAACATACAGTTTGCAGTAATGATGGGCAAGGCCCCTTTATTTGGTCTTCTCCGGAAGGGGGTTGTCAAATTGATATAGGGAAAAAAATCTTCTGCAACAGATCTTTAAATATGAAGAATATTGTTGCTGTTGGGTTTGATATGGATTACACTTTGGCTCAATATATGCCTGAAACTTTTGAATCCCTTGCTTATGAAGGCACAATCAGAAAGCTAGTGTATGATTTGGGATACCCTCGTGAGTTGCTGGAATGGACCTTTGATTGGAAGTACATGGTCAGAGGCTTGGTTCTTGATAAAAAGAGAGGCAACATTTTGAAGATGGATAGACACAAATATGTTAAGGTAGCCTATCATGGATTTAGAGAGATGTCAAAGGAAGATAAAGTTGGGACGTACGGAAATACTTTGATACGAGATTCTTTTGATGAGCCTGACTATGCACTTATTGACACCCTTTTTTCGCTAGCAGAAGCGTACTTGTTTGCCCAACTCGTTGACTTCAGGGATAAGTATCCTTCAAAAGTTCCAGATGGTGCCGACTACTCTCGTATGTATAAGGATGTTCGAGCTGCAGTTGACTTGTGCCATCGTGATGGGACTTTGAAGAAAATGGTTGCAAAAGATCCTAAAAAGTATATTAATGATGATACCTCAATAGTGCCCATGATGAAGATGCTTAGAGATTCTGGCCGTTCAACATTCTTAGTGACAAATAGTTTATGGGACTATACAAATATCGTGATGAATTTCCTTTGTGGCCCCCGGATGTTGGATGGTAGCGCCTCTTCCAATTTTGACTGGCTTCAGTACTTTGATGTTGTCATTACTGGCAGTGCAAAACCAAGTTTTTTCCATGATGACAATCGCGCCAATCTTTTTGAGGTTGAACCTGAGTCGGGAATGCTACTTAACACTGATAATGGCACTCCTATGCCACAGGTGGGAAACACATCACCAAGATTCCCATTGAAGGGGCTGAAAAAGACATGTAGAGTCTTCCAGGGAGGCAGTGTTGGTCATTTGCACAAACTACTTTCAATTGAGTCAAGTTCACAGGTTCTTTATGTTGGGGATCATATCTATGGGGATATATTGCGCAGCAAAAAAGTTCTGGGCTGGAGAACAATGCTGGTTGTTCCGGAGCTCGAGAGAGAGGTTGAACTCCTCTGGGAATTGAGGGATACCAGAAAGCAACTTCGATTGTTAAGGAATGAGCGAGATCTCATTGAAGACAAAATACATCATTTGAAGTGGTCTCTCAAGTTTGATGGTGTCCATCTTGATGAGAAGCCAATGTTAGCTACTGAACTAAGCAAATTGGAGTCTCAGAGGGAGAAAGTTCGCCTCTGTCATCAACAGGCTCAACGGGAATGTCATCAAAAGTTTCACAAGGTCTGGGGACAACTCATGAAGACTGGCTATCAGAACTCTCGCTTTGCACATCAGGTGGAGAGATTTGCGTGTCTCTACACTAGCCAAGTGACCAACCTCAGCCTCTACTCTCCAGACAAATACTACAGACCCAGTGAGGATTTCATGCCCCATGAATTTGATATCCTCTCCATCTGA 1617 0.4249 MGGNHKSVDDVTLQFQHTVCSNDGQGPFIWSSPEGGCQIDIGKKIFCNRSLNMKNIVAVGFDMDYTLAQYMPETFESLAYEGTIRKLVYDLGYPRELLEWTFDWKYMVRGLVLDKKRGNILKMDRHKYVKVAYHGFREMSKEDKVGTYGNTLIRDSFDEPDYALIDTLFSLAEAYLFAQLVDFRDKYPSKVPDGADYSRMYKDVRAAVDLCHRDGTLKKMVAKDPKKYINDDTSIVPMMKMLRDSGRSTFLVTNSLWDYTNIVMNFLCGPRMLDGSASSNFDWLQYFDVVITGSAKPSFFHDDNRANLFEVEPESGMLLNTDNGTPMPQVGNTSPRFPLKGLKKTCRVFQGGSVGHLHKLLSIESSSQVLYVGDHIYGDILRSKKVLGWRTMLVVPELEREVELLWELRDTRKQLRLLRNERDLIEDKIHHLKWSLKFDGVHLDEKPMLATELSKLESQREKVRLCHQQAQRECHQKFHKVWGQLMKTGYQNSRFAHQVERFACLYTSQVTNLSLYSPDKYYRPSEDFMPHEFDILSI* 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1059 538 Coils Coil 453 473 - -
Vvi18g1059 538 SUPERFAMILY HAD-like 43 534 IPR036412 -
Vvi18g1059 538 Gene3D - 204 423 IPR023214 -
Vvi18g1059 538 Gene3D - 41 88 IPR023214 -
Vvi18g1059 538 CDD HAD_cN-II 46 508 - -
Vvi18g1059 538 PIRSF NT5C2 26 537 IPR016695 -
Vvi18g1059 538 FunFam Cytosolic purine 5-nucleotidase 205 424 - -
Vvi18g1059 538 Pfam 5' nucleotidase family 45 533 IPR008380 -
Vvi18g1059 538 PANTHER 5'-NUCLEOTIDASE DOMAIN-CONTAINING 43 532 IPR008380 -
Vvi18g1059 538 Coils Coil 408 428 - -
Vvi18g1059 538 NCBIfam HAD-IG family 5'-nucleotidase 45 415 IPR008380 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1059 Vvi-Chr18 10688312 10697091 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1059 - - vvi:100254078 1096.26