Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1056 ATGGCAGCAGACGTGGCATGCTGTGGAACCAAGTTCTTCATATATGTGGTGATAATCGTGGGATTGGTGGGGTTTGCGGGTCTCATGGCTGGACTCACCCTGGGACTCATGTCTCTGGGTCTCGTCGACCTCGAAGTCCTCATCAAGTCGGGCCGCCCTCAGGATCGCATCCACGCCGCAAAAATATTTCCGGTGGTAAAGAATCAGCATCTTCTGCTTTGTACACTTCTTATCGGCAATTCTTTAGCTATGGAGTCTCTTCCCATCTTCTTGGACAAGCTGGTACCTCCATGGGCTGCAATTCTGATATCAGTCACTCTCATTCTCATGTTTGGCGAGATATTGCCACAAGCTCTCTGTACCAGATATGGCATGACTGTAGGAGCAACAATGGCACCCTTTGTCCGGGTCCTTCTTTTGTTATTCTACCCCATTGCTTATCCAATTAGCAAGGTTCTCGATTGGATGTTGGGCAAGGGACATGCTGCCCTTTTAAGAAGAGCAGAGCTTAAAACATTTGTGGATTTTCATGGCAATGAGGCTGGGAAAGGAGGGGACCTAACACATGATGAGACTACTATTATTGCTGGGGCACTCGAGTTAACTGAAAAGACTGCCAAAGATGCCATGACTCCCATATCGAAGGCATTTTCCCTTGATCTGGATGGAACTCTTACTTTGGAGACTTTGAATGCAATAATGACAATTGGGCATAGTAGAGTTCCAGTTTATGCTGGAAAACCAACAAATATAATTGGACTTATCCTGGTTAAAAATCTTTTAATGGTTGATCCAGACGATGCTGTTCCTCTAAGAAAAATGGTCATAAGAAAAATACCTAGGGTTTCTGAAAACATGCCTCTTTATGATATTCTAAATGAATTTCAGAAGGGCCACAGTCACATTGCTGTTGTATTTAAGGATCTGAATGAGACAAAAGAGGCACAAAATAAAACAAAAGATGGTGCACTTCAGGTGTCTATGAAAAGAGAGCAGGATGAGGTGGGAGCTACTGCAGTGACTCATAATCTAGGAGTTAAACAGGAATTGCATGATGCTGGCACAGCTGTAGCCAAGAATGATGCAGATCAACAGCAAAAGAAAAATCCTTCTGTTCCTGTCTTTAAGAAGCGACATAGGGGTTGTTCATTTTGCATTTTGGATGTTGAGAATGCTCCCCTTCCTGAGTTCCCACCGAATGAAGTTGCTGTTGGTGTAATTACTATGGAAGATGTCATTGAAGAACTTCTTCAGGAAGAGATATTGGATGAAACTGATGAATATGTAAATATCCACAACAGTCTCTGCCACTCTTTTGGGAACTCTTATTTTAGCTTTTGTGATTGA 1347 0.4298 MAADVACCGTKFFIYVVIIVGLVGFAGLMAGLTLGLMSLGLVDLEVLIKSGRPQDRIHAAKIFPVVKNQHLLLCTLLIGNSLAMESLPIFLDKLVPPWAAILISVTLILMFGEILPQALCTRYGMTVGATMAPFVRVLLLLFYPIAYPISKVLDWMLGKGHAALLRRAELKTFVDFHGNEAGKGGDLTHDETTIIAGALELTEKTAKDAMTPISKAFSLDLDGTLTLETLNAIMTIGHSRVPVYAGKPTNIIGLILVKNLLMVDPDDAVPLRKMVIRKIPRVSENMPLYDILNEFQKGHSHIAVVFKDLNETKEAQNKTKDGALQVSMKREQDEVGATAVTHNLGVKQELHDAGTAVAKNDADQQQKKNPSVPVFKKRHRGCSFCILDVENAPLPEFPPNEVAVGVITMEDVIEELLQEEILDETDEYVNIHNSLCHSFGNSYFSFCD* 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1056 448 PANTHER METAL TRANSPORTER CNNM 3 433 IPR045095 GO:0010960
Vvi18g1056 448 Pfam Cyclin M transmembrane N-terminal domain 18 190 IPR002550 -
Vvi18g1056 448 SUPERFAMILY CBS-domain pair 194 418 IPR046342 -
Vvi18g1056 448 CDD CBS_pair_CorC_HlyC_assoc 205 305 IPR044751 -
Vvi18g1056 448 Gene3D - 356 424 IPR046342 -
Vvi18g1056 448 Gene3D - 189 328 IPR046342 -
Vvi18g1056 448 ProSiteProfiles CNNM transmembrane domain profile. 8 191 IPR002550 -
Vvi18g1056 448 FunFam DUF21 domain-containing protein 189 324 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1056 Vvi-Chr18 10670789 10675735 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1056 K16302 - vvi:100245434 811.601