Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1055 ATGGCTCTGGCTCGGTTTGGTCGCCAAGCGAAACGCCCATATGGGGTGTGCGTGAAGATGACGGCGGTGGCCGTCTTGGGAATGTGTTTTATATTCGTTTGGTCTATGTTCTCGGCTTCTCCTTCTGCCGTGACCTCTCAAAGGAGTAGCTTCGGCGACATCAATGAGCCCGTCCCCGGTAGCACGGGGGTGGGCAGTTCACGGACTGGGTTGAAGAAGAACGAACCTGAAAAAACTGAATTGAGTGGAGGAAGAAACAAGGTGAAATTTGAATCTGATTTGGAAGAGAAAGATGAGAAAAAGCTTGATGGGTCTGTGACTTTGGCAGCCAATGGGAACAACTCTACAAATATTGATAAAAAGGAAGAAGCCAATGAGGGAAAAGAGGGGATAGATAAACAGAATCATGGATCAGAGGGATCTGAGAATAAGGAGTCCGAGAAAGAAAAGGAAGAAGGAGAAGTGGGAGGAGATGATAAAGAAGAAGCTGTAGATCGTGAGGGTGAAGCTAATGAGGATGTGGACGCAGACGGTGATTGGGCTGTTACAGTGGAGGAGGAACCTGTGGGGAAGGTGGAAGAGGAGAGTGGTGGGTCGAAGAGTACAGGGAAGAAGAAAAAGAGAAATGGTCCATTGTTTGATTTAAAGGCACAATATACCTGGAAATTATGTAGCACAAGGAGCAAGCACAATTACATTCCTTGTATTGACAATGAAAGTGGCACTGGAAGACTGCAGAGCTATCGGCATAGAGAGAGAAGTTGCCCAAGAACGCCTCCAATGTGTCTCATTCCTCTTCCAGCTAAGGGGTATTCTTCTCCAGTACCTTGGCCAGAGAGCAAATTGAAGGTACTGTATAAAAATGTGGCCCATCCCAAGCTTGCTGCATTTATTAAAACACATAGTTGGGTGGTGGAGTCTGGAGAATATCTTATGTTTCCCCAGAACCAGTCTGAATTCAAGGGTGGAGTTTTTCACTACCTTGAATCTCTTGAGGAGATGGTACCAGACATTGAATGGGGAAAAAATATTCGTGTTGTACTGGATATTGGCTGTACAGATGTGAGCTTTGGGGCATTTCTTCTTGATAAGGAGGTATTAACACTATCACTAGGTTTGAAGGATGATCTAGTGGACCTAGCACAGGTTGCTCTTGAACGTGGTTTTCCTGCAGTAGTTAGCCCTTTTGGAACTCGAAGACTTCCTTTTCCCAGTGGTGTTTTTGATGCCATTCACTGTGGTGGATGCAACATAGCTTGGCATTCTAATGGGGGTAAACTTCTTTTGGAGATGAATAGGATTTTGAGGCCTGGTGGATATTTTATTTTATCAAGTAAACATGACAACATTGAAGATGAAGAAGAAATGACCTCATTGACAGCTTCAATCTGTTGGAATGTCCTGGCTCATAAAACTGATGAAATCAGTGAAGTAGGTGTTAAAATATATCAGAAGCCAGAATCAAATGATATATATGAGTTGAGAAGGAAGAAAAATCCTCCTATATGCAAGGAAGATGAGAAACCAGATGCAGCCTGGTATGTCCCAATGAAGACTTGCTTGCACACCATCCCAGCAGCTATTGAAGAACGTGGGACAGAGTGGCCTGAGGAATGGCCAAAGAGGCTTGATACTTTTCCTGACTGGCTGGAGAATAGAGATAAGTTGATTGCAGACTCTGAGCACTGGAAAGCTATTGTCAGCAAGTCCTACCTCACAGGAATGGGAATTGACTGGTCAAATGTGCATAATATACTGGACATGAAATCCATCTATGGAGGATTTGCTGCAGCTCTTTCTGATCAGAAGGTCTGGGTGATGAATGTTGTCCCAGTCCATGCACCAGACACTCTTCCAATCATTTATGAACGTGGGCTTGTTGGAATCTACCATGATTGGTGCGAGTCCTTTGGTACATATCCCAGATCATATGATCTTCTGCATGCAGATCATATGTTCTCACGGCTTAAAAACAGGTGTAAGCAGCCAGTAGCAATCGTGGTTGAGATGGATCGAATATTACGGCCTGGAGGTTGGGCAATTATAAGAGATAAGGTGGAGATACTTGATCCCCTGGAAGGAATTTTGAGAAGTATGCACTGGGAAATCCGAATGACTTTCGCACAGGATAAGGAGGGTATCATGTGTGCCCAAAAAACCTTGTGGCGACCATGA 2175 0.4441 MALARFGRQAKRPYGVCVKMTAVAVLGMCFIFVWSMFSASPSAVTSQRSSFGDINEPVPGSTGVGSSRTGLKKNEPEKTELSGGRNKVKFESDLEEKDEKKLDGSVTLAANGNNSTNIDKKEEANEGKEGIDKQNHGSEGSENKESEKEKEEGEVGGDDKEEAVDREGEANEDVDADGDWAVTVEEEPVGKVEEESGGSKSTGKKKKRNGPLFDLKAQYTWKLCSTRSKHNYIPCIDNESGTGRLQSYRHRERSCPRTPPMCLIPLPAKGYSSPVPWPESKLKVLYKNVAHPKLAAFIKTHSWVVESGEYLMFPQNQSEFKGGVFHYLESLEEMVPDIEWGKNIRVVLDIGCTDVSFGAFLLDKEVLTLSLGLKDDLVDLAQVALERGFPAVVSPFGTRRLPFPSGVFDAIHCGGCNIAWHSNGGKLLLEMNRILRPGGYFILSSKHDNIEDEEEMTSLTASICWNVLAHKTDEISEVGVKIYQKPESNDIYELRRKKNPPICKEDEKPDAAWYVPMKTCLHTIPAAIEERGTEWPEEWPKRLDTFPDWLENRDKLIADSEHWKAIVSKSYLTGMGIDWSNVHNILDMKSIYGGFAAALSDQKVWVMNVVPVHAPDTLPIIYERGLVGIYHDWCESFGTYPRSYDLLHADHMFSRLKNRCKQPVAIVVEMDRILRPGGWAIIRDKVEILDPLEGILRSMHWEIRMTFAQDKEGIMCAQKTLWRP* 725
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1055 724 PANTHER SAM-DEPENDENT METHYLTRANSFERASE 23 723 IPR004159 GO:0008168
Vvi18g1055 724 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 517 705 IPR029063 -
Vvi18g1055 724 MobiDBLite consensus disorder prediction 184 209 - -
Vvi18g1055 724 Gene3D Vaccinia Virus protein VP39 321 503 IPR029063 -
Vvi18g1055 724 MobiDBLite consensus disorder prediction 45 209 - -
Vvi18g1055 724 CDD AdoMet_MTases 347 444 - -
Vvi18g1055 724 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 255 449 IPR029063 -
Vvi18g1055 724 MobiDBLite consensus disorder prediction 165 182 - -
Vvi18g1055 724 MobiDBLite consensus disorder prediction 119 164 - -
Vvi18g1055 724 MobiDBLite consensus disorder prediction 45 69 - -
Vvi18g1055 724 MobiDBLite consensus disorder prediction 71 104 - -
Vvi18g1055 724 Pfam Putative S-adenosyl-L-methionine-dependent methyltransferase 231 719 IPR004159 GO:0008168
Vvi18g1055 724 FunFam Probable methyltransferase PMT28 315 498 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1055 Vvi-Chr18 10663745 10668547 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1055 - - vvi:109121680 1406.73