Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1054 ATGCGTCTCTTTGAAGCCTACAATTCTCACTCAGCTCGACTCACTCTCTTGGCCCTCCTCTCCGCTTCCACCCTTTACTGCTTCTACAAATCTCTTCGTCTCAAAAGGCATGCACTCCTCTTCCCAACCACTAACCCTAATTCTTCCTCCAAAGGCAAGCTCTTCTTTGTTTCCCAAACAGGTACCTCCGAAATCCTAGCCCGTCGTCTCCTCCGTCTTCTTACCTCCTGTGATCTCTCTTTCGACCTTGTTCATCCCAAAGACTACGAGCCCGAAGACCTTTCCAAAGAAACTCTCGTTTTGATCGTAGCGTCCACGTGGGAAGATGGAAACCCCCCTCCCGATGCTGGATTCTTTTCCAATTGGCTTGCCGAGAGCGCAGACGATTTTAGGGTTGGATCTATGTTGCTCTCTCGTTGTAAATTCGCGGTGTTTGGGGTCGGAAGCCGATCATATGGTGCGGCATTCAATGCTGTTGCGAGGGGTTTCTCGAAGCGGATGCGGAAGCTTGGGGGTTTGCAGGTTTTGCCTGTTGAGGAAGGTGATGTTGATGCGGGTGATTTGGATGAGGTTTTTGATGTTTGGAGTAGGAAGTTGATTAGTGTTTTGAAGGGTGGTTCTGTGGAAAATGGGGTTTTTGATGGTTCTATGGCTGTCGTGGAGAGTGATGCTGAGACAATTGATGGGTCAGAAGAGGATTATGACGACGACGATGATGCGGATAGAGAGAATGGAGCCGAGGGGAGTATTGTTGATCTTGAGGATATTGCGGGTAAAGGTCCTTCAAGGAAAACAAAGACAATGACAACTTCTAGTGGGACAATTAATGGGGAAAAAGAAATGGTGACTCCAGTGATCAGAGCGAGCCTAGAAAAGCAGGGATACAAAATTATTGGTTCTCATAGCGGTGTCAAAATTTGTAGATGGACAAAGTCACAACTTAGAGGCCGTGGTGGCTGCTACAAGCACTCATTTTATGGCATAGAGAGTCACAGGTGCATGGAAGCAACCCCAAGTTTGGCATGTGCCAACAAATGTGTTTTCTGTTGGAGGCACCACACTAATCCTGTAGGAAAGAGCTGGCGCTGGAAGATGGATGATCCTTTGGAGATTGTGAATTCTGCCATTGACCTCCATACGAAGATGATAAGGCAAATGAAAGGTGTTCCTGGCGTTAAAGCGGAACGATTATCAGAAGGTCTTTCACCGAGGCATTGTGCTTTATCACTTGTTGGTGAACCTATCATGTATCCAGAAATTAACTCACTCATAGAAGAACTGCACCGGAGGCGGATTTCTACCTTTCTGGTGACAAATGCACAGTTTCCTGAAAAGATTAAAGAGTTGAAACCTGTTACTCAGTTATATGTTAGTGTAGATGCGGCAACAAAGGACAGCTTGAAGGCAATTGATAGGCCACTCTTTGGGGACTTTTGGGAGCGATTTGTTGATTCCTTGAAAGCTCTCAGGGAAAAACAACAACGAACTGTTTATCGCTTGACCTTGGTTAAAGGCTGGAATACTGAAGAAATAGATGCTTATTTTAATCTTTTTTCCATTGGGAAGCCCGACTTTGTTGAAATCAAAGGAGTTACATATTGTGGATCGTCTGCTACATCAAAGTTGACGATGGAGAATGTGCCCTGGCATGCTGATGTGAAAGCCTTTTCAGAGGCCTTAGCTCTGAAGAGCAAAGGGGAGTATGAGGTTGCTTGTGAGCACGTCCACTCGTGCTGTGTTCTCTTGGCAAAAACCGATAAGTTTAAGGTCAACAACCAATGGTTCACATGGATAGACTATGAAAAGTTCCATGATCTGGTAGCTTCTGGAAGACCTTTTAATAGCAAGGATTACATGGCTGCCACACCATCCTGGGCTGTCTACGGAGCAGAGGAAGGTGGGTTTGATCCAGGTCAGTCTCGTTATAGGAAGGAGCGGCATCATAGACCAAAAACCACTGATTAA 1965 0.4585 MRLFEAYNSHSARLTLLALLSASTLYCFYKSLRLKRHALLFPTTNPNSSSKGKLFFVSQTGTSEILARRLLRLLTSCDLSFDLVHPKDYEPEDLSKETLVLIVASTWEDGNPPPDAGFFSNWLAESADDFRVGSMLLSRCKFAVFGVGSRSYGAAFNAVARGFSKRMRKLGGLQVLPVEEGDVDAGDLDEVFDVWSRKLISVLKGGSVENGVFDGSMAVVESDAETIDGSEEDYDDDDDADRENGAEGSIVDLEDIAGKGPSRKTKTMTTSSGTINGEKEMVTPVIRASLEKQGYKIIGSHSGVKICRWTKSQLRGRGGCYKHSFYGIESHRCMEATPSLACANKCVFCWRHHTNPVGKSWRWKMDDPLEIVNSAIDLHTKMIRQMKGVPGVKAERLSEGLSPRHCALSLVGEPIMYPEINSLIEELHRRRISTFLVTNAQFPEKIKELKPVTQLYVSVDAATKDSLKAIDRPLFGDFWERFVDSLKALREKQQRTVYRLTLVKGWNTEEIDAYFNLFSIGKPDFVEIKGVTYCGSSATSKLTMENVPWHADVKAFSEALALKSKGEYEVACEHVHSCCVLLAKTDKFKVNNQWFTWIDYEKFHDLVASGRPFNSKDYMAATPSWAVYGAEEGGFDPGQSRYRKERHHRPKTTD* 655
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1054 654 MobiDBLite consensus disorder prediction 225 243 - -
Vvi18g1054 654 MobiDBLite consensus disorder prediction 637 654 - -
Vvi18g1054 654 PRINTS Flavodoxin signature 53 66 IPR001094 GO:0010181
Vvi18g1054 654 PRINTS Flavodoxin signature 139 149 IPR001094 GO:0010181
Vvi18g1054 654 PRINTS Flavodoxin signature 101 112 IPR001094 GO:0010181
Vvi18g1054 654 PRINTS Flavodoxin signature 164 183 IPR001094 GO:0010181
Vvi18g1054 654 Gene3D - 29 210 IPR029039 -
Vvi18g1054 654 Gene3D Aldolase class I 265 597 IPR013785 -
Vvi18g1054 654 ProSiteProfiles Flavodoxin-like domain profile. 52 200 IPR008254 GO:0010181
Vvi18g1054 654 MobiDBLite consensus disorder prediction 632 654 - -
Vvi18g1054 654 FunFam S-adenosyl-L-methionine-dependent tRNA 4-demethylwyosine synthase 269 598 - -
Vvi18g1054 654 SUPERFAMILY Flavoproteins 53 203 IPR029039 -
Vvi18g1054 654 MobiDBLite consensus disorder prediction 225 249 - -
Vvi18g1054 654 CDD Radical_SAM 338 538 - -
Vvi18g1054 654 ProSiteProfiles Radical SAM core domain profile. 326 569 IPR007197 GO:0003824|GO:0051536
Vvi18g1054 654 Pfam Radical SAM superfamily 338 517 IPR007197 GO:0003824|GO:0051536
Vvi18g1054 654 SFLD Radical SAM 278 588 IPR007197 GO:0003824|GO:0051536
Vvi18g1054 654 Pfam Wyosine base formation 521 584 IPR013917 -
Vvi18g1054 654 SFLD tRNA wybutosine-synthesizing 278 588 IPR034556 GO:0008033|GO:0051539
Vvi18g1054 654 Pfam Flavodoxin 54 195 IPR008254 GO:0010181
Vvi18g1054 654 PANTHER S-ADENOSYL-L-METHIONINE-DEPENDENT TRNA 4-DEMETHYLWYOSINE SYNTHASE 45 650 IPR034556 GO:0008033|GO:0051539
Vvi18g1054 654 SUPERFAMILY Radical SAM enzymes 339 519 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1054 K15449 - vvi:100255870 1296.18