Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1050 ATGCTTCGCCTTTGGGGTAAATCTCATCATGATCAAGAGAAGGATTTGCAGAAGTCTGATTCCAAGGTTCATGAGCTTAAGGCTGCACTTGGACCACTATCTGGACGTAGTTTACAGTATTGCAATGATGCATGCTTGAAGAGATATTTGGAAGCTCGGAACTGGAATGTAGACAAGTCAAAGAAAATGCTGGAAGAAACACTGACATGGAGGTCAACCTATAAGCCTGAGGAAATCCGCTGGAGTGATGTTGCGACTGAAGGTGAAACTGGAAAAGTATTCAGAGCAAATTTTCATGACCGGCATGGGAGAACTGTTCTCATACTGAGACCAGGAAAGCAGAATACAACAGCACTAGACAATCAGGTCCGTCACTTAGTATATCTCTTGGAGAACGCTATCCTTAATCTTCCAGAAGATCAAGAACAAATGGTATGGTTGATAGACTTCACTGGAATGACATTCAGCAACAGTGTGCCCATCAAAACTGCTCGAGACACAATAAATATTTTACAGAACCATTACCCTGAGAGGCTATTCTTAGCATTTCTTTACAGCCCTCCACGGATTTTTGAAGCTTTCTGGAAGGCTGTCAAATATTTATTGGATGCCAAAACATTCCAGAAGGTGAAATTTGTGTACCCAAAGGATAAAAATAGCGTTGAGTTGATGAGTTCATATTTTGATGTGGAAAATCTTCCAACCGACTTTGGAGGAAAGGCCACGATGAATTATGATCATGAGGAATTCTCAAGGCTAATGACCCAAGACGATGTTAAATCTGCCAATTTATGGGGATTCGGCGACAAGCTGCAGCATGTTAGTAATGGACATTCTGTAGCAGAGGTGTCTCCAGAGCCTGCATGCCTAGCACCAGCAAGCTGA 885 0.4237 MLRLWGKSHHDQEKDLQKSDSKVHELKAALGPLSGRSLQYCNDACLKRYLEARNWNVDKSKKMLEETLTWRSTYKPEEIRWSDVATEGETGKVFRANFHDRHGRTVLILRPGKQNTTALDNQVRHLVYLLENAILNLPEDQEQMVWLIDFTGMTFSNSVPIKTARDTINILQNHYPERLFLAFLYSPPRIFEAFWKAVKYLLDAKTFQKVKFVYPKDKNSVELMSSYFDVENLPTDFGGKATMNYDHEEFSRLMTQDDVKSANLWGFGDKLQHVSNGHSVAEVSPEPACLAPAS* 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1050 294 MobiDBLite consensus disorder prediction 1 21 - -
Vvi18g1050 294 SUPERFAMILY CRAL/TRIO N-terminal domain 22 83 IPR036273 -
Vvi18g1050 294 CDD SEC14 89 240 IPR001251 -
Vvi18g1050 294 Gene3D - 6 271 IPR036865 -
Vvi18g1050 294 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 81 245 IPR001251 -
Vvi18g1050 294 FunFam Phosphatidylinositol transfer protein 3 3 274 - -
Vvi18g1050 294 SUPERFAMILY CRAL/TRIO domain 81 254 IPR036865 -
Vvi18g1050 294 Pfam CRAL/TRIO domain 91 239 IPR001251 -
Vvi18g1050 294 SMART sec14_4 87 242 IPR001251 -
Vvi18g1050 294 Pfam CRAL/TRIO, N-terminal domain 40 66 IPR011074 -
Vvi18g1050 294 PANTHER GH16843P 12 271 - -
Vvi18g1050 294 SMART CRAL_TRIO_N_2 42 67 IPR011074 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1050 Vvi-Chr18 10643181 10646522 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1050 - - vvi:100262592 607.446