Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1047 ATGACGACGTTTCGTTGTGCTTCGGTGGCCTTTCTTTTCTCCCTCCTACACTCTGTTCTTCTAGCAAGATCGGAGTCGTTCATTGGTATAAACTATGGCCAAGTCGCCGATAACCTCCCCCCTCCATCAGCAACCGCAAAGCTTCTACAATCCACTTCCATTGAAAAAGTCAGGCTGTACGGAGCCGACCCAGCTATCATCAAAGCCCTTGCCAATACCGGCATCGGAATCGTCATCGGAACAGCGAACGGCGATGTCCCGGCACTAGCTTCCGATCCCAACTTCGCCAGGAATTGGATCAATTCCAATGTCCTTCCCTACTATCCCTCTAGCAAAATCATCCTCATCACTGTCGGAAACGAAGTCATGACCTCCGGCGACCAGAATCTGATGACGCAGCTCTTGCCGGCGATGCAGAATCTCCAAAATGCCCTCAACGGCGCATCACTTGGCGGCATGATTAAGGTATCCACCGTCCACTCCATGGCAGTGCTGAAGCAATCTGAACCGCCTTCTTCTGGAAGTTTCGATCCGAGCTTCGGGGACCTGATGAAAGGACTGTTAGGGTTTAACAAAGCCACTGGTTCGCCATTCGCGATCAATCCATACCCTTACTTCGCATACCGGAGCGACCACAGACCTGAAACGCTGGCTTTTTGTCTTTTTCAACCCAACTCCGGACGTTTCGACTCTGGGACTAATATCAAGTACATGAATATGTTCGATGCCCAGGTGGACGCTGTTCGAGCTGCATTGAACTCGATGGGCTTCAAGGAAATTGAGATAGTGGTTGCGGAGACGGGCTGGCCCTACAAAGGAGACAGCAACGAGGTAGGCCCAAGTATTGAAAATGCCAAGGCTTACAATGGGAACCTGATCTCGCACCTGAGGTCACTGGTGGGAACGCCCTTGATGCCTGGGAAATCAGTGGATACATATCTGTTTGCACTCTACGACGAGGACCTGAAACCTGGGCCGGGCTCAGAGCGCGCATTTGGGCTTTTTAAGACTGATCTCACCATGACCTATGATGTTGGCCTCTCCAAGGGCGCCCAGAACACTACTCCGGCACCGGCAACCCCCAAAACTCCGGCCACTCCATCTCCATCTCCATCGACGAACGGAACGTGGTGTGTGCCCAAATCAGTTGTATCAAATGCCCAACTCCAGGCTAATCTGGACTACGCCTGCGGACAAGGGATAGATTGCCGTCCAGTCCAACCAGGTGGGGCTTGTTTTGAACCCAACACCGTAGCATCACATGCTGCTTATGCAATGAACCTCTTCTACCAAAATTCTGCTCGCAATCCATGGAACTGTGATTTCTCACAAACAGCCACACTCACATCTAAAAATCCCAGCTATAAGGGTTGTATTTACCCTGGTGGACGTACCTGA 1398 0.5143 MTTFRCASVAFLFSLLHSVLLARSESFIGINYGQVADNLPPPSATAKLLQSTSIEKVRLYGADPAIIKALANTGIGIVIGTANGDVPALASDPNFARNWINSNVLPYYPSSKIILITVGNEVMTSGDQNLMTQLLPAMQNLQNALNGASLGGMIKVSTVHSMAVLKQSEPPSSGSFDPSFGDLMKGLLGFNKATGSPFAINPYPYFAYRSDHRPETLAFCLFQPNSGRFDSGTNIKYMNMFDAQVDAVRAALNSMGFKEIEIVVAETGWPYKGDSNEVGPSIENAKAYNGNLISHLRSLVGTPLMPGKSVDTYLFALYDEDLKPGPGSERAFGLFKTDLTMTYDVGLSKGAQNTTPAPATPKTPATPSPSPSTNGTWCVPKSVVSNAQLQANLDYACGQGIDCRPVQPGGACFEPNTVASHAAYAMNLFYQNSARNPWNCDFSQTATLTSKNPSYKGCIYPGGRT* 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1047 465 FunFam glucan endo-1,3-beta-glucosidase 7 372 461 - -
Vvi18g1047 465 FunFam Glucan endo-1,3-beta-glucosidase 14 26 353 - -
Vvi18g1047 465 Pfam X8 domain 376 447 IPR012946 -
Vvi18g1047 465 MobiDBLite consensus disorder prediction 350 375 - -
Vvi18g1047 465 SUPERFAMILY (Trans)glycosidases 28 346 IPR017853 -
Vvi18g1047 465 Gene3D - 372 459 - -
Vvi18g1047 465 Pfam Glycosyl hydrolases family 17 28 345 IPR000490 GO:0004553|GO:0005975
Vvi18g1047 465 Gene3D Glycosidases 27 354 - -
Vvi18g1047 465 PANTHER GLUCAN ENDO-1,3-BETA-GLUCOSIDASE BG1-RELATED-RELATED 17 449 IPR044965 GO:0004553|GO:0005975
Vvi18g1047 465 SMART X8_cls 376 460 IPR012946 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1047 Vvi-Chr18 10590891 10594929 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g1047 22 461 Miscellaneous Gene Families AT2G16230 67.045 0.0 623
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1047 - - vvi:100257468 903.664