Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1043 ATGGCTGACCGCACTGATTCCGATTCTCGTCATAACCTTACCCTCACCACTCCTCACCAGATCTCCAAAGATGTGCAAGGATCTGACAATCCTATTCCACTTTCACCACAGTGGCTTCTCCCAAAGCCAGGAGAGAATAAGCATGGAATGGTGACTGGGGAAAATCACTTCGGCCCATACCCTGGTTATGCCAATCGTGCAGATACGATGAAATCCTCTGGAAATGGTGATGGAATGCTTGATTCTCTGAAGAAAAAAGATGTTTTTAGGCCAACCCTGCCTGATATGGAAACTGGGCGTCGTGATCGCTGGCGCGATGAAGAAAGAGACACTAATTCCTCTATTCGCAGAGATCGTTGGAGGGAGGGAGATAAAGAGCTTAGTGATACTCGCAAGATGGATCGTTGGACGGAGAACTCATCCACAAGGCACTTTGGAGAAGCCCGTCGTGGTCCATCTGAACGTTGGAATGATTCGAGTAACAGGGAGACTAATTATGATCAGCGGCGGGAGAGCAAGTGGAACACACGCTGGGGCCCTGATGATAAGGATACCGAAGGTTTGCGTGAGAAGTGGATGGACTCTAGCAGAGATGGTGAGATGCCTCTTGATAAAGGATTGTCTACTAATCATGGGAAGGATGAGAGGGACGGGGATCTTTATCGACCATGGAGACCTAACTCTTTGCAAAGTCGGGGCAGGGCAGAGCCTTCTCATCATCAATCTCTTACACCTAATAAACAAGTTCATACATTTTCTTATGCTCGTGGACGTGGGGAGAATCCTCCTCCAACCTTTGCACTTGGTCGTGGCAGGGTTAATTCTGGTGGAAATCTGATGAACAATTATTCTACTATTTCTCAGTCTTTAGGAACTGTATCAGACAAATGTGAAAGTGGTCATGGAGAGCCTTCTCCATTACGGTATAATAGGACAAAATTGCTTGATGTGTACAGGATGACTGACATTAGATCGTCTGGAAAACTATTAGATGGCTTTGTGCAAGTGCCTTCTCTTTCGCAGGAGGAACCATTAGAGCCTCTTGCACTCTGTGCACCTACTTCTGAAGAATTGGTTATTTTGAAAGGAATTGATAAAGGGGACATAGTAAGCAGTGGTGCACCTCAGATTTCTAAAGAGGGTTCTATTGGACGGAACTCTGAGTTTCTTCCATCAAGACGAACCAAGCCTGGTAGTAGAGAAGATTTACCCCTTGCAGTTGATGATTCTAAAGATGAAAGCAATGACAATTCAAAAGCTTTGAGAGAAGATGGCACGCCTTATAGAAAGTCTGATGAGGTGCCTATTAATAGAGACTTGAGCATGCATGGCAATTCCTCTATTCATCCTGGGAACACGTGGCGAGCTCCATCATTGGGAGAACGGTCACATACAGTCACTCATGATCGGAGAGATATTCCAACTGATGTCAGGTCAGTACCATCTGACATGGGGTGGGCACAGCCAAAGAAGGAAATGAATAGTGAATGGACAAGTGGTTTGGCTAACCCACCTTACTCTAAAGATGAATTGAAATGGCAAATCAGCGAGGATCCCATTATTAAAAGGCAGGCATCACTGGTTTTGGACAGGGAGCCGGAAGCCAGAAAACTTTCACAGCCTTCCCCAGAGGACATGGTCTTGTATTATAAAGATCCCCAGGGTGAAATTCAAGGTCCATTTTCTGGAAGTGATATCATTGGATGGTTTGAGGCTGGATATTTTGGCATAGATTTACAAGTTCGCTTAGCAAGTGCACCAAATGATTCCCCTTTTTTTGTGCTTGGTGATGTTATGCCCCATTTACGAGCAAAAGCCAGGCCACCGCCTGGTTTTGGTGTTCCAAAACAGAATGAAATTACTGATGCTTCAAGTAGGCCAAACTATAGTAGCTTTGGAAATCTTCATGCAGGTTCAAGTGAGATTGATGTAATAAAGAATGAACCAAGGCATAAACATGGTTCAGCAACAGAAGCTGAGAATAGATTTTTGGAGTCACTGATGTCTGGTAATATGGGCAGTCCCCCTGTTGAGAAGTTTGCTTTCTCTGAAGGTTTGCAAGGATATATTGGGAATAACGCTGGTGGTGCACCCCCAATGGGAGTAGAAAGTGGAAATAACCTATACCTCTTGGCTAAGCGAATGAATCTTGAAAGGCAGAGGTCTTTACCAAATCCTTATCCATATTGGCCTGGGAGAGATGCAACTTCCATGGCTCCAAAGTCTGAGATGGTCCCAGACTCTGCGGCCCCACATCCAAAACTCCTATCTTCAATGACTGACAATTCTCGTCAATCTTCTAATTCTAATGCAGACTTGATGTCAATCCTTCAAGGCATATCTGATCGGTCTTCTTCTGGTGTAAGTAATGGAGTTACTGGATGGTCAAATTTTCCTGTACAAGGTGGCTTGGACCCACTCCAAGATAAGATGGACTTGCAACATGGTCAGAATTTCCCTCCCCAAGCTGCATTTGGAATCCAACAGCAGAGGCTGCAACCGCAGAACCAACCCTCTCTAACAAATTTACTTGCTCAAGCTATGGATAATCCCTCTGGTATTTTGGCCCCAGAGAAGCTACTCTCTTCTAGTCTCCCTCAAGATCCGCAATTATTAAGTATGTTGCAACAGCAGTACTTGATGCAGTTACATTCCCAGGCAACTGTTCCTGCACAACAGCTCTTGTTGTTGGATAAACTGTTGCTCCTTAAGAAACAGGAGGAGCAGCAACAGTTGTTGCGCCAACAACAACAATTGCTTTCTCAGGTTCTGTCTGAGCATCATTCTAACCAGATTTTTGGTCAGGCTGCTGCAATGGCAGTAGGAAATGCTTCTGTGGATCATTCTCGGCTTCAACCACCTCAAGAGTTGTTTCAGATGCCAGTTCCCGCTATGCAGGATGAACGGGCTACTAACCTTGCAAGTGGTCCTCCGCCAATCTCCCAGGATGCGAATTACAATGTTAGTTCAGAAGGCTCTTTTCTACATCTGCCACATCAAATGTTTGGGAATACTACCCACCAAAAGAGCTATGGTACTATGCTGCCAGAACAGATTGACGAAATTCAACAAAAGGAACCATTGCCAGCATCTGCAGTGATTGATAGCTCAGCCTTGTTGCTGTCAACCAACCTATCTACTGAGGAGCCTTCTGCTTTGCAGAATTCCACCCTTACTTCTGATGGCCAGGCTGCTGAAAACCTGGAGAAGAATTTACAGGACACCCTGATAATCAATGAACCTGTCACTGTTGCAAACTCTGTGGGTGGTGCAAATTCTGTGCCTCTGAAGTCTTCTGGAAAATCTATTGATAGGTCATCTGAAGGAATTTCTGAGAACAAAATGTTCAATGACATGGAGGTTCAATTGGATGTTACTCCTGAGGAACTGCAGATTGAAAAAGAGCGATGCAATGATGAGCCATCTTTGGAGACAGAATCAAAAAGTGTTGAAGTACGTGAGGTAAGAAAAGCTTCTGAAAAGAGGACAAGAAAGCAGAAGTCCTCAAAATCGCAGTCTTCATCGGACCAGGCAAAGGGAGTATCTAAGACAGTTTCTTTGCAGCAACCAAAACAATATGAAACTGAAGGAACAATTGTTGGTAACACAAAACCTGAGACACATATTAGCCCAGGAGAAACAACCTCTGGAACATCTCCTCAAAAAACAGCAGATAAAAAATTTGGTATTGTTAGTACTGAAACTGTGGATTCTCAACAAGTTAATGGCCCATCTCCTTTGGGAATTCCTAGAGATGATTCAAAAACTGCAGAAGGAAAGAGTGAGCCACAGCTAGTTGGGTCTGTCCCAGTGCAGAATGCACAAGTACATTCTGGACAACGGGCTTGGAAACATGCTCCTGGTTTCAAGGCTAAGTCATTATTAGAAATTCAAGAGGAAGAACAGAGGAAGGCTAAGGCAGAAATGGTGGTTTCTGAGATCCCCTTGTCTGTTAATGCTGTGAATTTGCCAACTCCTTGGGCTGGAGTCATTTCCAATTCAGATTCTAAAACTTCTAGAGAAATTCATCAAGAAGCTGCTAGCACCGAGTTAAATTTGGGGAAATCTGAAAGCTTTCATAATACAAAAGCCAAAAAGAGCCAGCTACATGATCTGTTAGCAGAAGAAGTTTTGGCAAAGTCTAGTGAACGAGACATGAAGATTCTGGATATTGTTTCTAGTCTGCCTTCGTTACCCGTTGTGTCCACCAGTTTAGATGCTATTGATGATGACAACTTTATTGAGGCTAAAGACACTAAAAAGAGTCGCAAAAAGTCTGCAAAGGCTAAGGGTGTTGGGGCAAAGGTCTCAGCTCCCAGTGCCTCTGTTGACATATCTGTGGGATCAAGTCCAGTTGAGAAAGGAAAAATTTCTCGTCTTGTGCAGCAAGAAAAGGAGGTGTTGCCTGCACCCCCATCAGGTCCTTCTTTAGGAGATTTTGTTCCATGGAAAGGGGAGCATGTGAACCCTTCCCCTGCTCCAGCATGGTCCTCAGACTCTGGAAAGCTTCCTAAACCCACATCTTTGAGGGACATCCAAAAGGAGCAAGGAAAAAAGGCTTCTTTAGTCCAAAACCATGTCCAGATACCAACTCCTCAGAAATCCCAGCCAACTCAGGTCACCCGTGGGAGTGGTCCTTCATGGTCCATTTCTGCATCATCTCCTGCCAAAGCATCTCCTATCCAGATTAAAGGAGAGGATGATCTATTCTGGGGCCCTATTGATCAATCCAAGCCTGATTCTAAGCAGGTGGATTTCCCTCATCTTGCAAGCCAGGGCAGTTGGGGAACCAAAAATACTCCAGTAAAAGGAAGTCCAGGAGGATCATTGAGCCGTCAGAAATCCATGGGTGGGAGAGCAACAGAGCATTCTCTTTCATCTTCACCTGCATCAGCTCAATCATCCCTAAAGGGAAAAAGGGATGCCATGAGCAAGCATTCAGAAGCCATGGATTTCAGGAATTGGTGCGAGAGTGAGTCTGTTAGGCTCACTGGGACAAAGGATACTAGTTTCCTGGAATTTTGTTTGAAGCAATCTAGATCAGAGGCTGAGATACTTCTGACAGAGAACCTGAATGACCCCAATCACGAGTTCATTGACAAGTTCCTTAACTACAAGGAGTTGTTATCAGCAGATGTACTTGAAATTGCCTTTCAAAGTCGGAACGATTCAAAGGCCACTGGATTCAGTGCCGGGGACATGAATTCTGACAATTTAGGTTTTGGGGACTTTGAACGAGATTACTCAGCTGGTGCTGATGGATCCATGAAAGGGGGAGGTAAGAAAAGGGGAAAGAAAGGGAAGAAAGTGAGTCCTGCGGTTCTGGGGTTCAATGTGGTCAGCAACCGTATCATGATGGGAGAGATTCAGAGTGTGGAGGATTAG 5385 0.4472 MADRTDSDSRHNLTLTTPHQISKDVQGSDNPIPLSPQWLLPKPGENKHGMVTGENHFGPYPGYANRADTMKSSGNGDGMLDSLKKKDVFRPTLPDMETGRRDRWRDEERDTNSSIRRDRWREGDKELSDTRKMDRWTENSSTRHFGEARRGPSERWNDSSNRETNYDQRRESKWNTRWGPDDKDTEGLREKWMDSSRDGEMPLDKGLSTNHGKDERDGDLYRPWRPNSLQSRGRAEPSHHQSLTPNKQVHTFSYARGRGENPPPTFALGRGRVNSGGNLMNNYSTISQSLGTVSDKCESGHGEPSPLRYNRTKLLDVYRMTDIRSSGKLLDGFVQVPSLSQEEPLEPLALCAPTSEELVILKGIDKGDIVSSGAPQISKEGSIGRNSEFLPSRRTKPGSREDLPLAVDDSKDESNDNSKALREDGTPYRKSDEVPINRDLSMHGNSSIHPGNTWRAPSLGERSHTVTHDRRDIPTDVRSVPSDMGWAQPKKEMNSEWTSGLANPPYSKDELKWQISEDPIIKRQASLVLDREPEARKLSQPSPEDMVLYYKDPQGEIQGPFSGSDIIGWFEAGYFGIDLQVRLASAPNDSPFFVLGDVMPHLRAKARPPPGFGVPKQNEITDASSRPNYSSFGNLHAGSSEIDVIKNEPRHKHGSATEAENRFLESLMSGNMGSPPVEKFAFSEGLQGYIGNNAGGAPPMGVESGNNLYLLAKRMNLERQRSLPNPYPYWPGRDATSMAPKSEMVPDSAAPHPKLLSSMTDNSRQSSNSNADLMSILQGISDRSSSGVSNGVTGWSNFPVQGGLDPLQDKMDLQHGQNFPPQAAFGIQQQRLQPQNQPSLTNLLAQAMDNPSGILAPEKLLSSSLPQDPQLLSMLQQQYLMQLHSQATVPAQQLLLLDKLLLLKKQEEQQQLLRQQQQLLSQVLSEHHSNQIFGQAAAMAVGNASVDHSRLQPPQELFQMPVPAMQDERATNLASGPPPISQDANYNVSSEGSFLHLPHQMFGNTTHQKSYGTMLPEQIDEIQQKEPLPASAVIDSSALLLSTNLSTEEPSALQNSTLTSDGQAAENLEKNLQDTLIINEPVTVANSVGGANSVPLKSSGKSIDRSSEGISENKMFNDMEVQLDVTPEELQIEKERCNDEPSLETESKSVEVREVRKASEKRTRKQKSSKSQSSSDQAKGVSKTVSLQQPKQYETEGTIVGNTKPETHISPGETTSGTSPQKTADKKFGIVSTETVDSQQVNGPSPLGIPRDDSKTAEGKSEPQLVGSVPVQNAQVHSGQRAWKHAPGFKAKSLLEIQEEEQRKAKAEMVVSEIPLSVNAVNLPTPWAGVISNSDSKTSREIHQEAASTELNLGKSESFHNTKAKKSQLHDLLAEEVLAKSSERDMKILDIVSSLPSLPVVSTSLDAIDDDNFIEAKDTKKSRKKSAKAKGVGAKVSAPSASVDISVGSSPVEKGKISRLVQQEKEVLPAPPSGPSLGDFVPWKGEHVNPSPAPAWSSDSGKLPKPTSLRDIQKEQGKKASLVQNHVQIPTPQKSQPTQVTRGSGPSWSISASSPAKASPIQIKGEDDLFWGPIDQSKPDSKQVDFPHLASQGSWGTKNTPVKGSPGGSLSRQKSMGGRATEHSLSSSPASAQSSLKGKRDAMSKHSEAMDFRNWCESESVRLTGTKDTSFLEFCLKQSRSEAEILLTENLNDPNHEFIDKFLNYKELLSADVLEIAFQSRNDSKATGFSAGDMNSDNLGFGDFERDYSAGADGSMKGGGKKRGKKGKKVSPAVLGFNVVSNRIMMGEIQSVED* 1795
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1043 1794 Coils Coil 902 922 - -
Vvi18g1043 1794 MobiDBLite consensus disorder prediction 1090 1113 - -
Vvi18g1043 1794 MobiDBLite consensus disorder prediction 231 248 - -
Vvi18g1043 1794 Gene3D - 533 612 IPR035445 -
Vvi18g1043 1794 MobiDBLite consensus disorder prediction 1134 1169 - -
Vvi18g1043 1794 SUPERFAMILY GYF domain 535 602 IPR035445 -
Vvi18g1043 1794 MobiDBLite consensus disorder prediction 1090 1119 - -
Vvi18g1043 1794 MobiDBLite consensus disorder prediction 1134 1284 - -
Vvi18g1043 1794 PANTHER GYF DOMAIN-CONTAINING PROTEIN 1 1794 - -
Vvi18g1043 1794 SMART gyf_5 546 601 IPR003169 GO:0005515
Vvi18g1043 1794 MobiDBLite consensus disorder prediction 734 769 - -
Vvi18g1043 1794 MobiDBLite consensus disorder prediction 394 437 - -
Vvi18g1043 1794 MobiDBLite consensus disorder prediction 1170 1245 - -
Vvi18g1043 1794 MobiDBLite consensus disorder prediction 207 222 - -
Vvi18g1043 1794 ProSiteProfiles GYF domain profile. 545 596 IPR003169 GO:0005515
Vvi18g1043 1794 MobiDBLite consensus disorder prediction 11 33 - -
Vvi18g1043 1794 MobiDBLite consensus disorder prediction 462 477 - -
Vvi18g1043 1794 Pfam GYF domain 549 585 IPR003169 GO:0005515
Vvi18g1043 1794 MobiDBLite consensus disorder prediction 80 201 - -
Vvi18g1043 1794 MobiDBLite consensus disorder prediction 1465 1643 - -
Vvi18g1043 1794 MobiDBLite consensus disorder prediction 375 393 - -
Vvi18g1043 1794 MobiDBLite consensus disorder prediction 1 248 - -
Vvi18g1043 1794 MobiDBLite consensus disorder prediction 755 769 - -
Vvi18g1043 1794 MobiDBLite consensus disorder prediction 1518 1558 - -
Vvi18g1043 1794 MobiDBLite consensus disorder prediction 1587 1638 - -
Vvi18g1043 1794 MobiDBLite consensus disorder prediction 370 502 - -
Vvi18g1043 1794 CDD GYF 545 602 IPR003169 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1043 Vvi-Chr18 10529788 10547313 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1043 - - vvi:100262487 3359.7