Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1033 ATGCTCAGTGGCATTGATTTAGACTCCACAATGAGGGTTATTGATGATACATTCAGATTGTCGAAATGTGTCCAAATAGCTCGTCTATATCTTGAGGATGATGATGCTGTTAATGCGGAAGCTTTTATTAATAAAGCCTCATTCTTGGTTAGCAACAGTCAGCATGAAGTATTGAATTTACAGTACAAGGTTTGTTATGCTAGGATTTTAGATTTGAAGAGGAAGTTCTTGGAGGCAGCATTACGATATTATGACATATCCCAAATTGAGAAACGGCAAATAGGAGATGAGTTGATTGACGAGGAAGCATTGGAGCAAGCTCTATCTGCTGCTGTAACATGCACAATTTTGGCTGCTGCAGGTCCTCAACGTTCTCGTGTTCTGGCGACTTTGTATAAAGATGAACGCTGCTCAAAGTTGAAGATTTATCCTATATTGCAAAAGGTGTATTTGGAGAGAATTTTGAGAAAACCTGAAATCGATGCCTTCGCTGAAGAACTAAAAGCCCATCAGAAAGCACTTTTACCTGACAATTTTACTGTGTTGGATCGTGCAATGATTGAGCATAATCTTTTGAGTGCAAGCAAGCTTTACACAAATATAAGCTTTGATGAGCTAGGTACATTGCTGGGCATTGCTCCTCAGAAGGCCGAGAAGATAGCGTCAAGAATGATTTATGAGGATAGAATGAGGGGATCTATTGATCAGGTGGAAGCTGTTATACATTTTGAGGATGACACTGAGGAGTTACAACAGTGGGATCAACAGATTGTTGGCCTCTGCCAAGCTCTCAATGATGTTCTTGATAGCATGGCGAAGAAGGGCTTGTCAATTCCTGTCTGA 843 0.4045 MLSGIDLDSTMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSNSQHEVLNLQYKVCYARILDLKRKFLEAALRYYDISQIEKRQIGDELIDEEALEQALSAAVTCTILAAAGPQRSRVLATLYKDERCSKLKIYPILQKVYLERILRKPEIDAFAEELKAHQKALLPDNFTVLDRAMIEHNLLSASKLYTNISFDELGTLLGIAPQKAEKIASRMIYEDRMRGSIDQVEAVIHFEDDTEELQQWDQQIVGLCQALNDVLDSMAKKGLSIPV* 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1033 280 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 12/COP9 SIGNALOSOME COMPLEX SUBUNIT 4 1 274 IPR040134 -
Vvi18g1033 280 SUPERFAMILY "Winged helix" DNA-binding domain 175 251 IPR036390 -
Vvi18g1033 280 Pfam PCI domain 151 244 IPR000717 -
Vvi18g1033 280 FunFam COP9 signalosome complex subunit 4 172 252 - -
Vvi18g1033 280 Gene3D - 174 252 IPR036388 -
Vvi18g1033 280 ProSiteProfiles PCI domain profile. 75 248 IPR000717 -
Vvi18g1033 280 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 177 260 IPR000717 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1033 Vvi-Chr18 10436482 10444964 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1033 K12178 - vvi:100254062 542.732