Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1023 ATGTCATCATCCTATTTTTCAAGACTGAGAAAGGCAGTTCACCATGGGATCCAAAGATCAACCATCGGGCAAGGAGGTGGGCTCCAAGACTCGGTGGAGGTTCTACTTTGGCGAGGAAAACTGTTGTTTGGGAACTCTAGGTTGTTTCATTCTAAACCATTTTCAAGCTTATCAGACCTGCATGTATTATTACACCCTGGCACTGATTTTGTGGCAAGATCAGATTCACATTTAGGAAATCAAAGAAGGACTCTTTCTGTTGTTGGAACACTTTCTCGCGCGTTCTCCATTCCATCCGTGTCTGGCCCTTCATTGCAGGCTTGTGCATATCACATCGATTCTGCACTCTCTAAGCCAGGCGTCTTTTCCTATGTGTCACAGAAGACACCTATGGCTGCTTGTAGTCCCAGAGCAGTGTTAGGTGATTGCCACTTAGATAATTTTATTTCAAGGCATGTGCATCTCTCAGTGTCTATAAAAAATGGTAGTAATTTTCATGGCAATAGAGGTTTCAATAGCTGCAGAAAGGCTAGCATGAGCTTAACAATTCAAGAGCAGTCCAATAATTGTTTGCTTTATGGATATTTCATATACAATGCTGCAAAGAGGAGAAGCAATTCTAATCCATATATTTTATCTGGATTGAGAGATTTCCATGGATCATTATCTGCATGTTACTCTGCTGGAACTGCACCCGATATGTCATTTCACAATTCTCAACTTGAGGAACAGCTTGCAAATTCTTCGGTTTCTTCTGAACAGAACATCCAATCGGACAGAACCTTGAAATTTCTATCAGGGTCATGTTACCTGCCCCATCCTGACAAAGAAGAAACTGGTGGTGAGGATGCTCACTTCATTTGTATTGATGAACATGCCATAGGTGTGGCAGATGGTGTTGGTGGCTGGGCAGAACTTGGTGTTGATTCAGGGCAGTATGCACGAGAACTCATGTCTAATTCAGTAACTGCAATCCAAGAGGAGCCTAAGGGTTCTGTGGACCCAGCTAGGGTTTTGGAGAAAGCTCACTTTAGCACAAAAGCCAAAGGGTCCTCAACAGCATGCATTATAGCCCTCACAGAGCAGGGTCTCCATGCCATTAATTTAGGGGACAGTGGATTCATAGTGATAAGAGATGGATGTACTGTCTTCCGGTCCCCAGTACAGCAGCATGATTTCAATTTCACCTATCAACTAGAGAGTGGAAATGGTGGTGATTTACCTAGCTCTGGTCAGGTTTTTACAATTCCTGTTGCTCCAGGAGATGTTGTAATTGCTGGCACAGATGGACTGTTTGACAATCTGTACAATAATGAGGTTATCGCAGTGGTGGTTCATGCCACTAGAGCCAGTTTAGGGCCTCAGGTGACAGCTCAGAAGATTGCAGCATTAGCACGCCAACGAGCACAGGACAAAAACCGGCAGACACCTTTCTCCACTGCTGCCCAAGATGCTGGGATCCGTTATTATGGTGGCAAGCTTGATGATATCACTGTCGTTGTTTCCTATATTACCAGTTACAGTAATGGATACCGCTCTTCCAACAGCTCCTGGCTCTGA 1560 0.4417 MSSSYFSRLRKAVHHGIQRSTIGQGGGLQDSVEVLLWRGKLLFGNSRLFHSKPFSSLSDLHVLLHPGTDFVARSDSHLGNQRRTLSVVGTLSRAFSIPSVSGPSLQACAYHIDSALSKPGVFSYVSQKTPMAACSPRAVLGDCHLDNFISRHVHLSVSIKNGSNFHGNRGFNSCRKASMSLTIQEQSNNCLLYGYFIYNAAKRRSNSNPYILSGLRDFHGSLSACYSAGTAPDMSFHNSQLEEQLANSSVSSEQNIQSDRTLKFLSGSCYLPHPDKEETGGEDAHFICIDEHAIGVADGVGGWAELGVDSGQYARELMSNSVTAIQEEPKGSVDPARVLEKAHFSTKAKGSSTACIIALTEQGLHAINLGDSGFIVIRDGCTVFRSPVQQHDFNFTYQLESGNGGDLPSSGQVFTIPVAPGDVVIAGTDGLFDNLYNNEVIAVVVHATRASLGPQVTAQKIAALARQRAQDKNRQTPFSTAAQDAGIRYYGGKLDDITVVVSYITSYSNGYRSSNSSWL* 520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1023 519 PANTHER PROTEIN PHOSPHATASE 2C 219 506 IPR039123 -
Vvi18g1023 519 SMART PP2C_4 255 502 IPR001932 -
Vvi18g1023 519 SMART PP2C_SIG_2 264 504 IPR001932 -
Vvi18g1023 519 Gene3D - 275 400 IPR036457 -
Vvi18g1023 519 SUPERFAMILY PP2C-like 269 501 IPR036457 -
Vvi18g1023 519 Gene3D - 407 509 IPR036457 -
Vvi18g1023 519 ProSiteProfiles PPM-type phosphatase domain profile. 265 504 IPR001932 -
Vvi18g1023 519 FunFam 5-azacytidine resistance protein azr1 273 398 - -
Vvi18g1023 519 Pfam Stage II sporulation protein E (SpoIIE) 293 502 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1023 Vvi-Chr18 10334806 10341233 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1023 K17508 - vvi:100252344 1016.14