Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1020 ATGGCGGGTCGTAGGGACGGGCTTTTGACGAGAAACAGCAACGGTAACTCGCTTCGCGGATCTCGAATCGCCGTAGCTATTACGATCGGAGTTCTTCTAGGATGCGTCTTCGCCTTCTTGTATCCTCACGGATTATTCCGCTCCGATCCACAAATCATAAATCCTCGGCTTGTAAAATCTAATCTCCAGGTCGGTTCTCCCTCATGTGAATCCCCAGAACGGCTTAAGATGCTCAAGTCTGATATTGTGGCATTATCAGAGAAGAATGCTGATCTGAAGAAGCAGGTCAGGGAGCTAACGGAAAAGCTACGGCTGGCTGAACAGGGAAAAGACCAGGCTCAAAAGCAGTTTATGGTATTGGGTGAACAGCATAAAGCCGGGCCTTTTGGTACGGTAAAGAGTTTGAGAACCAACCCAACTCTTATCCCTGATGAATCTGTGAACCCAAGGTTGGCAAAGATCTTGGAGGAAGTTGCTGTTAGTAAAGAGCTTATAGTTGCTCTCGCCAATTCAAATGTGAAATCATCATTGGAGGTGTGGTTCGCTAACATCAAGCGAGTGGGTATACCCAATTACCTGGTTGTGGCATTAGATGACGACATTGAAAATTTCTGCAAATCCAATAATGTCCCAGTGTACAAGAGAGACCCAGATGAAGGTATTGATTCAGTTGCAAGATCAGGAGGTAACCATGCTGTCTCAGGACTGAAGTTTCAGATCTTGAGGGAATTCTTGCAGCTGGGTTACAGTGTTCTGCTCTCAGATATTGATATAGTTTACTTGCAAAATCCATTTGATTATCTTTACCGTGATTCTGATGTGGAATCCATGACTGATGGTCACAACAACTATACAGCTTATGGATATAATGATGTCTTTGATGAACCAGCTATGGGTTGGGCTCGATATGCTCACACCATGAGGATATGGGTATATAACTCTGGCTTTTTCTACATAAGACCTACAATTCCTTCAATTGAGCTTTTGGATCGTGTAGCTGACAGGCTTGCTCACTCAAAAGCATGGGACCAGGCTGTTTTCAATGAGGAGCTCTTTTTCCCTTCACATCCTGGGTACACTGGACTTCATGCTTCCAGGAGAACTATGGATTTCTATCTCTTTATGAATAGTAAGGTCCTCTTCAAGACAGTGAGGAAGGATGCTAAACTAAAAAAGCTGAAGCCAGTCATTGTTCATGTGAATTATCACCCGGATAAACTTTCCAGGATGAAAGCAGTTGTCGAGTTCTATGTTAATGGCAAGCAAGATGCACTGGATCCTTTCCCTGATGGTTCTAACTGGTAG 1305 0.4398 MAGRRDGLLTRNSNGNSLRGSRIAVAITIGVLLGCVFAFLYPHGLFRSDPQIINPRLVKSNLQVGSPSCESPERLKMLKSDIVALSEKNADLKKQVRELTEKLRLAEQGKDQAQKQFMVLGEQHKAGPFGTVKSLRTNPTLIPDESVNPRLAKILEEVAVSKELIVALANSNVKSSLEVWFANIKRVGIPNYLVVALDDDIENFCKSNNVPVYKRDPDEGIDSVARSGGNHAVSGLKFQILREFLQLGYSVLLSDIDIVYLQNPFDYLYRDSDVESMTDGHNNYTAYGYNDVFDEPAMGWARYAHTMRIWVYNSGFFYIRPTIPSIELLDRVADRLAHSKAWDQAVFNEELFFPSHPGYTGLHASRRTMDFYLFMNSKVLFKTVRKDAKLKKLKPVIVHVNYHPDKLSRMKAVVEFYVNGKQDALDPFPDGSNW* 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1020 434 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 35 - -
Vvi18g1020 434 PANTHER ARABINOSYLTRANSFERASE RRA3 12 433 IPR044290 GO:0016757|GO:0080147
Vvi18g1020 434 SUPERFAMILY Nucleotide-diphospho-sugar transferases 165 374 IPR029044 -
Vvi18g1020 434 Pfam Nucleotide-diphospho-sugar transferase 189 410 IPR005069 -
Vvi18g1020 434 Coils Coil 75 116 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1020 Vvi-Chr18 10315268 10317126 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1020 K20783 - vvi:100255856 874.389