Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1016 ATGAAGCTAGGATTGAAGAAAGGATGGAAGTCTATTGTGCCCCTTCGTTTGAGGGGCAAATCAGCAACTCGTTTTTGCATTTTTCCAAAGGTGAAGTCAGCTGGCTATGGTCCTGGAAATACACCAGTTTATCTCAATGTGTACGACTTGACACCTATGAATGGTTATGTCTATTGGGCCGGCCTTGGAATCTTTCACTCTGGTGTAGAAGTTCATGGTGTAGAATATGCATTTGGAGCTCACGACTACCCAACTAGTGGCGTCTTTGAGGTTGAACCCCGACAGTGCCCCGGCTTCAAGTTTAGGAAGTCAATTCTCGTTGGGACAACATGCTTGGATCCAATTCAGGTTAGAGAGTTCATGGAGCGCCACTCTGCAAGTTACAACGGCGATACATATCACTTGATTGTTAAGAATTGCAACCATTTCTGCAAGGACATCTGTTACAAGTTGACTGGGCGCCCAATTCCAAAATGGGTCAATAGACTGGCAAAAATAGGTTCAATCTGTAACTGCATACTTCCTGAAGCACTTAAGATTTCTGCTGTTAGACATGACCCCAATTACCAAGAATATGATAGTGAGAAGAGGAGGCTGAGAAGTGCCTTCAATTGCCTGTCTTCAATCTCCATGCGGCAGAGGCAGTTGTCAACTTCCTCGATGTTTCTGCATTCACCCTTGAAAGGCTGCCTACCCCCTTGGGAATTGAGAAGATCTACCAATCGCTCATTGAAAGACAGATAG 744 0.4489 MKLGLKKGWKSIVPLRLRGKSATRFCIFPKVKSAGYGPGNTPVYLNVYDLTPMNGYVYWAGLGIFHSGVEVHGVEYAFGAHDYPTSGVFEVEPRQCPGFKFRKSILVGTTCLDPIQVREFMERHSASYNGDTYHLIVKNCNHFCKDICYKLTGRPIPKWVNRLAKIGSICNCILPEALKISAVRHDPNYQEYDSEKRRLRSAFNCLSSISMRQRQLSTSSMFLHSPLKGCLPPWELRRSTNRSLKDR* 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1016 247 Gene3D PPPDE domains 37 189 IPR042266 -
Vvi18g1016 247 ProSiteProfiles PPPDE domain profile. 41 178 IPR008580 GO:0008233
Vvi18g1016 247 PANTHER DESUMOYLATING ISOPEPTIDASE 39 220 IPR008580 GO:0008233
Vvi18g1016 247 Pfam PPPDE putative peptidase domain 42 176 IPR008580 GO:0008233
Vvi18g1016 247 SMART DUF862_2a 41 179 IPR008580 GO:0008233
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1016 Vvi-Chr18 10288804 10291782 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1016 K22763 - vvi:100245551 523.472