Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1010 ATGGCAATGTCTGTAGCAACGAAGCTCCAATCACCCGCGAAACCGCTTTCTGAAGGCCGGGTGGTTCTGGGTCCTGGCGGGAACAGATTTAGGGTTTCAGAAGAAGCTAAACGCAAAAAGGAGGGTTTGAAGAAGCCGCAGCAGCACAGGAAGCAGTCGTCGGAGGTTCCGGAAGCGGTTGTCCGGAATAATTTGTCTTTTGAGAGCTCGTGTTCTTCGGATTCTTCTTCAAGTGGTTCTTCTGTAAAAATGGTGAATTCTAGGGGGAGAGTGAAGCGAAATGGGTTGAAGCCTGTGAAGGTGGTTCCTCATGGCGTTGAGGTTCCGGCGAAGCGGTGTGATTGGATCACTCCAAACTCGGACCCACTTTATACTTCTTTCCATGATGAAGAATGGGGAGTTCCTGTTCATGATGATAAGAAACTATTTGAGCTACTAGTCTTATCACAAGCATTGGCAGAACTAAGCTGGCCCACAATACTTAACAAGAGAGACATATTCAGGAAGCTTTTTGACAATTTTGATCCATCATCTATTGCAAAGTTCACTGATAAGAAGTTGCTATCACTAAAAGCTAGTGGTGGCACATTGCTATCTGAACCAAAGCTTCGTGCCGTCATTGAAAATGCTAACCAGATGCTTAAGGTTCAGCAGGAGTTTGGTTCCTTCAGCAACTACTGCTGGAGCTTCATTAATCATAAGCCAATGAAAAACGGATTCCGCTATGCACGTCAAGTACCAGTTAAGACGCAGAGAGGCTTTCGTTGTGTTGGCCCAACTGTCATTTATTCATTCATGCAAGTTGCAGGGCTTGTCAATGATCACCTTCTAACATGCTTCAGATTCCAGGAATGTAATTCAAATATCAAAAAGGATCTTCAAGCTAAGACAGAGGAGACAGAGGTTCTAACTAACGCTCTGGAGAACAATTGCTTATCTCACGATTGA 948 0.4462 MAMSVATKLQSPAKPLSEGRVVLGPGGNRFRVSEEAKRKKEGLKKPQQHRKQSSEVPEAVVRNNLSFESSCSSDSSSSGSSVKMVNSRGRVKRNGLKPVKVVPHGVEVPAKRCDWITPNSDPLYTSFHDEEWGVPVHDDKKLFELLVLSQALAELSWPTILNKRDIFRKLFDNFDPSSIAKFTDKKLLSLKASGGTLLSEPKLRAVIENANQMLKVQQEFGSFSNYCWSFINHKPMKNGFRYARQVPVKTQRGFRCVGPTVIYSFMQVAGLVNDHLLTCFRFQECNSNIKKDLQAKTEETEVLTNALENNCLSHD* 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1010 315 Coils Coil 290 310 - -
Vvi18g1010 315 MobiDBLite consensus disorder prediction 57 87 - -
Vvi18g1010 315 PANTHER OS04G0501200 PROTEIN 20 291 - -
Vvi18g1010 315 MobiDBLite consensus disorder prediction 31 56 - -
Vvi18g1010 315 Gene3D Hypothetical protein; domain 2 110 282 - -
Vvi18g1010 315 MobiDBLite consensus disorder prediction 1 89 - -
Vvi18g1010 315 SUPERFAMILY DNA-glycosylase 111 285 IPR011257 GO:0003824|GO:0006281
Vvi18g1010 315 Pfam Methyladenine glycosylase 119 281 IPR005019 GO:0006284|GO:0008725
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1010 Vvi-Chr18 10239939 10243971 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1010 K01246 - vvi:100250686 612.838