Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1008 ATGATTAGACTCTTTAAAGAAAAGGAGAAACTGAGGGAAATTGCTGAAAGTTCAGACGGAAGAGCTCCAGTGAAGAAGCTAAGTGCAGGAGAATTACGGCTTCATAAAGATATAAGTGAGTTGAACCTACCTGAATCTTGTGGCATATCATTCCCCAATGGGAAGGATGATCTCTTGAACTTTGAGATCACTATTCGGCCTGATGAAGGATTTTATGGAGGTGGGGATTTTGTGTTCTCCTTTGAAGTTCCCCTTATGTACCCTCATGAGGCACCCAAGGTCAAATGCAAGACAAAGGTCTACCATCCTAACATTGACTTGGCAGGAAATGTCTGTCTTAACATTCTTCGGGAGGACTGGAACCCTGTCCTAAACATAAACACTATCATCTATGGACTGTATCATCTATTCACGCAACCCAGTCACGAAGACCCTCTCAATCCTGATGCAGCTGCACTGTTGAGGGCTTCTTCACAAGGATTTCAAGCTGTTGTGAGACATGTAATGACTAATGGGTATAGAGGAGAGACATATCACCCTCTATTCATGCAGCATATGAAGGCAGCATCCTACCATCAATCACGACTCAAATAA 594 0.4293 MIRLFKEKEKLREIAESSDGRAPVKKLSAGELRLHKDISELNLPESCGISFPNGKDDLLNFEITIRPDEGFYGGGDFVFSFEVPLMYPHEAPKVKCKTKVYHPNIDLAGNVCLNILREDWNPVLNINTIIYGLYHLFTQPSHEDPLNPDAAALLRASSQGFQAVVRHVMTNGYRGETYHPLFMQHMKAASYHQSRLK* 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1008 197 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 29 174 IPR000608 -
Vvi18g1008 197 Pfam Ubiquitin-conjugating enzyme 33 167 IPR000608 -
Vvi18g1008 197 FunFam NEDD8-conjugating enzyme Ubc12 25 184 - -
Vvi18g1008 197 SMART ubc_7 32 174 - -
Vvi18g1008 197 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 57 161 - -
Vvi18g1008 197 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 101 116 IPR023313 -
Vvi18g1008 197 CDD UBCc 33 166 IPR000608 -
Vvi18g1008 197 Gene3D Ubiquitin Conjugating Enzyme 26 180 IPR016135 -
Vvi18g1008 197 SUPERFAMILY UBC-like 23 175 IPR016135 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1008 Vvi-Chr18 10234043 10235820 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1008 K10579 - vvi:100245559 409.068