Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1007 ATGAGGTCGATGAATTTGGTGGATCGACCATGGGTTCGTGATTTCAATCAATCAAGCTTATTTGGGTGTGCGCTGGGAATGAGCTATGGCCCCATTGGGGCCGGACCTGGTTGCACATCATCTGTGAGAGTGGGAACAAAGACGCCACATTTGCGTGGTGCGGTTTTTGCGATTATCACAAAGGAGGACTCTGTGAAGGAGGGGAAGGGCCCCACCCAGAAGGAAACGCCCTTCAGTTTCAAGGATTACATGATTCAGAAGGCCAGTTCGGTGCATAAAGCCTTGGACGAGGCTGTTTACGTGAAAAGCCCTATCAAAATCCATGAAGCAATGCGCTACTCTCTCCTCGCCGGCGGCAAGCGTGTCCGACCGGCTCTCTGTTTAGCCGCTTGCGAGCTCGTGGGCGGAGATGAGTCCAACGCCATGCCGGCGGCTTGTGCGGTCGAAATGATTCACACTATGTCTCTGATTCACGACGACCTCCCCTGTATGGACAACGACGACCTCCGGCGAGGAAAGCCCACCAACCACAAAGTCTTCGGGGAAGACGTCGCCGTTCTGGCCGGTGATTCTCTTCTGGCATTCGCATTCGAGCACCTTGCGACTGCCACAAGCGGGGTTTCGTCATCCAGAATTGTGGCAGCCGTGGGTGAATTGGCGAAATCCATTGGAGCAGAGGGGCTAGTTGCAGGGCAGGTGGTGGATATAAGCAGTACAGGACAGTCCGATGTGGGGCTAGACCAACTGGAGTTCATACACATACACAAGACCGCGGCATTGCTGGAGGCAGCGGTGGTTCTTGGGGCCTTACTGGGAGGTGGGAGCGATGAGGAGGTGGAGAAATTGAGAAAGTATGCGAGGCAGGTTGGGCTACTGTTTCAAGTGGTGGATGACATTCTTGATGTCACCAAATCATCTCAGGAACTGGGGAAGACGGCAGGCAAGGATTTGGTAACCGATAAGGCAACCTACCCCAAACTAATGGGGCTGGAGAAATCAAGAGAATTTGCAGAGAATCTCAACAAGGAAGCAAAGGAACAGCTTTCTGGGTTTGATTTGGAGAAGGCAGCGCCTTTGATTGCGCTTGCTGATTATATCGCTTACCGGCAAAATTAA 1116 0.5278 MRSMNLVDRPWVRDFNQSSLFGCALGMSYGPIGAGPGCTSSVRVGTKTPHLRGAVFAIITKEDSVKEGKGPTQKETPFSFKDYMIQKASSVHKALDEAVYVKSPIKIHEAMRYSLLAGGKRVRPALCLAACELVGGDESNAMPAACAVEMIHTMSLIHDDLPCMDNDDLRRGKPTNHKVFGEDVAVLAGDSLLAFAFEHLATATSGVSSSRIVAAVGELAKSIGAEGLVAGQVVDISSTGQSDVGLDQLEFIHIHKTAALLEAAVVLGALLGGGSDEEVEKLRKYARQVGLLFQVVDDILDVTKSSQELGKTAGKDLVTDKATYPKLMGLEKSREFAENLNKEAKEQLSGFDLEKAAPLIALADYIAYRQN* 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1007 371 Pfam Polyprenyl synthetase 107 344 IPR000092 GO:0008299
Vvi18g1007 371 SFLD Isoprenoid Synthase Type I 83 369 - -
Vvi18g1007 371 Coils Coil 327 354 - -
Vvi18g1007 371 FunFam Geranylgeranyl diphosphate synthase 77 371 - -
Vvi18g1007 371 Gene3D Farnesyl Diphosphate Synthase 77 371 IPR008949 -
Vvi18g1007 371 SUPERFAMILY Terpenoid synthases 81 352 IPR008949 -
Vvi18g1007 371 CDD Trans_IPPS_HT 107 369 IPR000092 GO:0008299
Vvi18g1007 371 PANTHER FARNESYL DIPHOSPHATE SYNTHASE 71 371 - -
Vvi18g1007 371 ProSitePatterns Polyprenyl synthases signature 2. 289 301 IPR033749 -
Vvi18g1007 371 ProSitePatterns Polyprenyl synthases signature 1. 156 172 IPR033749 -
Vvi18g1007 371 SFLD Polyprenyl Transferase Like 83 369 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1007 Vvi-Chr18 10227177 10228292 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1007 K13789 - vvi:100257359 714.916