Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1004 ATGCTTGAGGCAGTGGAGAGTTCCGTCAATGGCGGATTTTCTCAGTTGCAGAGCTGTGGTGACAGCAGCGAAGAAGAGCTCTCCGTTCTTCCTCGTCACACCAAGGTAGTCGTCACCGGCAATAACCGTACCAAATCTGTGCTTGTGGGCCTCCAGGGCGTGGTCAAGAAGGCTGTCGGCCTTGGTGGTTGGCATTGGCTGGTTCTTACAAATGGTATAGAAGTAAAGTTGCAGAGGAATGCTCTTAGTGTGATTGAAGCTCCTACTGGTAATGAGGAAGATGATGATCTTGAATTTGAGAACATGCAGTGGAATGGCTCTGATATGGCTTCTGATGACACTCAAAAGTCCCACAGATCCAGACATCGAACACACAAGTCTTCCGGGTCATCACATAAGACCATGAGCAGGTCCCTTTCTTGTGACTCACAGTCTAAGGGATCTATTTCTACTCCAAGAGGGTCTACGGTTGACTTGAGCAAGCTAGAGATGGCTGCATTATGGAGATACTTGCGACACTTCAACCTTGTGGATGGCATCCCCAACCCATCTAAGGAGCAATTAATTGATGTTGTTCAGAGGCATTTCGTGACGCAGCAAATGGACGAGTTGCAGGTCATCGTGGGGTTTGTGCAGGCTGCAAAGAGACTGAAGACTGTCTGCAAATGA 669 0.4843 MLEAVESSVNGGFSQLQSCGDSSEEELSVLPRHTKVVVTGNNRTKSVLVGLQGVVKKAVGLGGWHWLVLTNGIEVKLQRNALSVIEAPTGNEEDDDLEFENMQWNGSDMASDDTQKSHRSRHRTHKSSGSSHKTMSRSLSCDSQSKGSISTPRGSTVDLSKLEMAALWRYLRHFNLVDGIPNPSKEQLIDVVQRHFVTQQMDELQVIVGFVQAAKRLKTVCK* 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1004 222 Gene3D - 137 222 IPR038291 -
Vvi18g1004 222 MobiDBLite consensus disorder prediction 105 155 - -
Vvi18g1004 222 PANTHER SAP30 21 219 IPR024145 -
Vvi18g1004 222 Pfam Sin3 binding region of histone deacetylase complex subunit SAP30 162 215 IPR025718 GO:0005515
Vvi18g1004 222 MobiDBLite consensus disorder prediction 131 155 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1004 Vvi-Chr18 10207093 10210278 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1004 - - vvi:100247103 410.609