Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1001 ATGGAGGTGAAGTTTAAGTGTAGTTCATGTGCCGTTTCTTCGAGGACGAAGTTTTGGAGCAGGCTCCGATTCGCTGTTGTTTTCGAGCTTGTATTGATATTGGCATGGTTTGAAGCTGCTAATGCAAAATCCCAAGAACACCAACTGCAAGCGCAAGGTGTGGAAAAGGGAAGTAGAAATGTTGTGTCTCATTCCTGCATCCATGACCAGATACTGGAACAAAGGAGGCGGCCAGGTCGCAAAGTGTATTCTGTTACCCCGCAGGTTTATGAGGAATCTGGTATCTCAAAACCCCTTCATGGCAAAGGGAGGGCATTGCTTAGCGTTTCTAAATTTTCAGAGGAGCAAGAGGATGTGAAGGAACCGATTAGAATTTATCTTAATTATGATGCTGTTGGTCATTCTCCTGACAGAGACTGTCGGAATGTTGGTGACATTGTCAAGCTTGGCGAGCCTCCTCTAAGAAGTTCTGTGACTTTTGCTCCTGGCATCCCTTCTTGCAACCCTCATAGTGATCCTCCAATTTTTGGTGACTGCTGGTACAACTGCACTTTGGATGATATAGCTGGTGAAGACAAAAGGCACCGCCTTCGTAAGGCTTTAGGGCAGACGGCAGATTGGTTTAGAAGAGCCTTGGCTGTTGAACCTGTAAAAGGGAATCTGCGGTTGAGTGGATATTCTGCATGTGGACAAGATGGAGGTGTGCAGCTTCCACGTGCATATGTAGAAGAGGGTGTAGCCAATGCAGATTTGGTTCTTTTGGTAACTACCAGACCAACGACTGGGAACACTCTTGCATGGGCAGTGGCATGTGAACGTGATCAGTGGGGTCGTGCAATAGCCGGGCATGTGAATGTTGCTCCTCGTCATTTGACTGCTGAAGCGGAGACCTTGCTTTCAGCTACTCTAATACATGAGGTTATGCATGTTCTCGGCTTTGATCCCCATGCCTTTGCACATTTTCGGGATGAGAGGAAAAGAAGACGTGCTCAGGTCATTGAACAAACTGTTGATGAAAAGCTTGGGCGAACAGTGACACGTGTGGTGCTTCCTCGTGTTGTCATGCACTCACGGTACCATTATGGGGCATTCTCTGAAAATTTTACTGGTTTAGAATTAGAAGATGGAGGAGGACGCGGCACTTCAGGATCTCACTGGGAAAAGAGGCTTCTGATGAATGAGATTATGACAGGCTCAGTGGATACAAGATCCGTTGTTTCGAAAATGACACTAGCTTTATTAGAGGATAGTGGCTGGTATCATGCTAATTATAGTATGGCAGACCGCCTTGATTGGGGCCGCAACCAAGGAACTGAATTTGTTACCTCCCCCTGCAATCTCTGGAAGGGGGCATACCATTGCAACACAACACAGTCATCGGGCTGCACATATAACAGGGAGGCAGAGGGTTACTGCCCAATTGTAAGTTATAGTGGAGACCTCCCTCAGTGGGCCCGTTATTTTCCACAGGCTAACAAAGGTGGGCAATCATCATTGGCCGATTATTGCACTTATTTTGTAGCTTACTCCGATGGATCATGTACAGATACTAACAGTGCTCGAGCACCTGACAGAATGTTGGGTGAAGTGCGAGGAAGTAACTCTAGATGTATGGCCTCATCACTTGTACGAACTGGGTTTGTACGGGGTTCTACAACTCAGGGAAATGGTTGCTATCAGCATAGGTGTATAAACAATACTCTGGAGGTTGCTGTGGATGGTATTTGGAAAGTATGTCCTGAAGCCGGTGGACCAATTCAATTCCCAGGCTTCAATGGTGAGCTAATTTGCCCAGTTTACCATGAACTCTGTAGCAGTGCCCCAGTTCCTGTAGTTGGGCACTGTCCCAATTCATGTGACTTCAATGGAGACTGTGTTGATGGAAGGTGTCATTGCTTTCTTGGGTTTCATGGTCATGATTGTAGTAAACGCTCTTGCCCTAGCAATTGTAATGGACATGGCAAGTGCCTTCCATCTGGGGTCTGTCAATGTGTTAATGGATACACTGGCATCGACTGCTCTACTGCTGTTTGCGATGAACAATGCAGTCTTCATGGAGGGGTCTGTGATAATGGAGTTTGTGAGTTTCGATGTTCTGACTATGCGGGCTACACTTGCCAGAACAGCTCCCTGCTCCTCTCCAGTCTTTCAGATTGCAGAGAGGTATTGGAGAGTGATGCCTCTGGGCAACATTGTGCGCCTAGTGAACCAAGTATTTTGCAGCAGCTAGAAGTGGTTGTTGTTATGCCCAACTATCGTCGGCTGTTCCCAAGTGTTGCTAGGAAGGTTTTTAATTTCTTTATCAGTGGGTACTGTGATGCAGCTGCTAAACGGCTAGCCTGCTGGATCTCGATCCAAAAGTGTGACAAGGATGGTGACAATAGGCTTCGGGTATGCCATTCAGCATGTCAGTCTTACAACTTGGCATGTGGAGCATCCCTTGACTGCTCTGATGAAACCCTCTTCAGCAGCCAGGATGAAGGGGAGGGTCAGTGCACAGGCTCTGGTGAGATGAAACTATCATGGTTGAATCGATTGCGGAGCAGGCTTACCTTTAGTTCCAGTTCCTTGTAA 2574 0.4705 MEVKFKCSSCAVSSRTKFWSRLRFAVVFELVLILAWFEAANAKSQEHQLQAQGVEKGSRNVVSHSCIHDQILEQRRRPGRKVYSVTPQVYEESGISKPLHGKGRALLSVSKFSEEQEDVKEPIRIYLNYDAVGHSPDRDCRNVGDIVKLGEPPLRSSVTFAPGIPSCNPHSDPPIFGDCWYNCTLDDIAGEDKRHRLRKALGQTADWFRRALAVEPVKGNLRLSGYSACGQDGGVQLPRAYVEEGVANADLVLLVTTRPTTGNTLAWAVACERDQWGRAIAGHVNVAPRHLTAEAETLLSATLIHEVMHVLGFDPHAFAHFRDERKRRRAQVIEQTVDEKLGRTVTRVVLPRVVMHSRYHYGAFSENFTGLELEDGGGRGTSGSHWEKRLLMNEIMTGSVDTRSVVSKMTLALLEDSGWYHANYSMADRLDWGRNQGTEFVTSPCNLWKGAYHCNTTQSSGCTYNREAEGYCPIVSYSGDLPQWARYFPQANKGGQSSLADYCTYFVAYSDGSCTDTNSARAPDRMLGEVRGSNSRCMASSLVRTGFVRGSTTQGNGCYQHRCINNTLEVAVDGIWKVCPEAGGPIQFPGFNGELICPVYHELCSSAPVPVVGHCPNSCDFNGDCVDGRCHCFLGFHGHDCSKRSCPSNCNGHGKCLPSGVCQCVNGYTGIDCSTAVCDEQCSLHGGVCDNGVCEFRCSDYAGYTCQNSSLLLSSLSDCREVLESDASGQHCAPSEPSILQQLEVVVVMPNYRRLFPSVARKVFNFFISGYCDAAAKRLACWISIQKCDKDGDNRLRVCHSACQSYNLACGASLDCSDETLFSSQDEGEGQCTGSGEMKLSWLNRLRSRLTFSSSSL* 858
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1001 857 ProSitePatterns EGF-like domain signature 2. 662 673 IPR000742 -
Vvi18g1001 857 Gene3D Leishmanolysin , domain 2 320 445 - -
Vvi18g1001 857 ProSitePatterns EGF-like domain signature 1. 662 673 IPR000742 -
Vvi18g1001 857 Pfam Leishmanolysin 181 605 IPR001577 GO:0004222|GO:0006508|GO:0007155|GO:0016020
Vvi18g1001 857 PRINTS Leishmanolysin (M8) metalloprotease family signature 408 437 IPR001577 GO:0004222|GO:0006508|GO:0007155|GO:0016020
Vvi18g1001 857 PRINTS Leishmanolysin (M8) metalloprotease family signature 255 284 IPR001577 GO:0004222|GO:0006508|GO:0007155|GO:0016020
Vvi18g1001 857 FunFam leishmanolysin-like peptidase isoform X2 448 507 - -
Vvi18g1001 857 Gene3D Leishmanolysin domain 4 509 604 - -
Vvi18g1001 857 Gene3D Leishmanolysin domain 3 449 507 - -
Vvi18g1001 857 SUPERFAMILY Metalloproteases ("zincins"), catalytic domain 120 611 - -
Vvi18g1001 857 Gene3D Laminin 645 676 - -
Vvi18g1001 857 Gene3D Laminin 614 643 - -
Vvi18g1001 857 ProSiteProfiles EGF-like domain profile. 642 674 IPR000742 -
Vvi18g1001 857 SMART egf_5 645 674 IPR000742 -
Vvi18g1001 857 SMART egf_5 614 642 IPR000742 -
Vvi18g1001 857 Gene3D - 116 310 - -
Vvi18g1001 857 FunFam leishmanolysin-like peptidase isoform X2 321 445 - -
Vvi18g1001 857 FunFam Peptidase M8, leishmanolysin 116 310 - -
Vvi18g1001 857 Pfam EGF-like domain 646 673 IPR013111 -
Vvi18g1001 857 PANTHER LEISHMANOLYSIN-LIKE PEPTIDASE 59 827 IPR001577 GO:0004222|GO:0006508|GO:0007155|GO:0016020
Vvi18g1001 857 FunFam leishmanolysin-like isoform X2 509 604 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1001 K01404 - vvi:100257368 1764.97