Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1000 ATGGCGATATCCCCAAAGCTTTGTCTTCTTCCACTCCTATGTTTGCTAGTGAGCACAGTTTCGGCCACAGTGTTTACCCTTGAGAATCATTGCAGCTACACAATATGGCCTGGAACTTTGTCCGGCAATGGCGCCGCTATCCTCGGGAACGGCGGTTTTGTATTGCCACCTGGTGCATCGATCCAGTTGCAGGCACCATTTGGATGGTCGGGAAGGTTCTGGGCCCGAACTGGATGCAACTTCGACAGCGCCGGCAAGGGTACATGCACCACCGGAGACTGTGGCGCACTGAACTGCATCGGTGGCGGCGTTCCTCCGGTGAGCCTTGCGGAATTCACTATCGGTGCCGACAGTGCCGATAAAGATTTCTACGACGTGAGCCTCGTGGACGGCTACAATGTGGGAATGTCGATTGAAAGCTCGGGCGGAACCGGAGACTGCCAGAGGGCCGGTTGTGTGGCTGATCTGAACTCGAACTGCCCGGCGGAGTTGCAGATAACTGATTCAGGTTCGGTGGTTGCATGCAAGAGTGCGTGCGCAGCTTTTAACACGGCCCAGTATTGTTGCACCGGCGACCACAGCACCCCCCAGACATGTTCGCCGACGCAGTACTCGGAGATATTCAAGAAAGCGTGCCCGACGGCGTATAGTTATGCTTATGACGATCCAACCAGTACCTGTACTTGCACCGGGGCAAATTACTTGATTACCTTTTGCCCCACCGCATTTTGA 732 0.5492 MAISPKLCLLPLLCLLVSTVSATVFTLENHCSYTIWPGTLSGNGAAILGNGGFVLPPGASIQLQAPFGWSGRFWARTGCNFDSAGKGTCTTGDCGALNCIGGGVPPVSLAEFTIGADSADKDFYDVSLVDGYNVGMSIESSGGTGDCQRAGCVADLNSNCPAELQITDSGSVVACKSACAAFNTAQYCCTGDHSTPQTCSPTQYSEIFKKACPTAYSYAYDDPTSTCTCTGANYLITFCPTAF* 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1000 243 FunFam Thaumatin-like protein 1a 23 240 - -
Vvi18g1000 243 CDD TLP-PA 24 239 - -
Vvi18g1000 243 PIRSF PR5 2 242 IPR001938 -
Vvi18g1000 243 Gene3D Thaumatin 23 240 IPR037176 -
Vvi18g1000 243 PANTHER OS03G0233200 PROTEIN 13 240 IPR001938 -
Vvi18g1000 243 PRINTS Pathogenesis-related protein signature 24 36 IPR001938 -
Vvi18g1000 243 PRINTS Pathogenesis-related protein signature 122 138 IPR001938 -
Vvi18g1000 243 PRINTS Pathogenesis-related protein signature 84 113 IPR001938 -
Vvi18g1000 243 PRINTS Pathogenesis-related protein signature 230 239 IPR001938 -
Vvi18g1000 243 PRINTS Pathogenesis-related protein signature 72 83 IPR001938 -
Vvi18g1000 243 SUPERFAMILY Osmotin, thaumatin-like protein 24 240 IPR037176 -
Vvi18g1000 243 SMART tha2 25 240 IPR001938 -
Vvi18g1000 243 Pfam Thaumatin family 29 240 IPR001938 -
Vvi18g1000 243 ProSiteProfiles Thaumatin family profile. 22 242 IPR001938 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1000 Vvi-Chr18 10174295 10175226 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g1000 7 240 Receptor kinase-like Gene Family AT5G38280 43.265 4.19e-59 196
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1000 - - vvi:100232856 501.901