Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0993 ATGCACAGGTACTTCTCCATCTTCACTCCTCCACTTCCCTCACGCCTCCATCTCCGTCGGCCAATCCACCTTTCACGGACCCTTCTCTGGAAGCTCCGGGACGAATCCCATCCAGCCCCACCCGAATTAGTCTCCCGCATCTGCCGTCTCGTGCTTCTCCGCCGTTGCAATGCCATCTCCAAACTTAATTTCGTCTTCTCTGACGATATCGTCGACGCTGTTCTCCGGAACCTCAGACTAAACCCTACTGCTTCTCTAGGGTTTTTCCAATTTGTTTCTAAGCAGCAAAATTTTAGACCCAACGTTAAGTCTTATTGTAAGCTTGTTCATATATTGTCCAGAGGTCGAATGTATGATGAGACCAGAGCGTACTTGAACCAGCTCGTTGATCTTTGTAAGTTCAAGGATCGTGGCAATGTGATTTGGGATGAATTAGTTGGGGTTTATCGAGAATTTGCATTTTCGCCCACTGTTTTTGATATGATTCTGAAGGTGTATGTGGAAAAGGGTTTGACAAAGAATGCATTGTACGTGTTTGATAATATGGGCAAGTGTGGCCGAATACCAAGCTTGCGGTCTTGCAATAGTTTGTTGAACAATTTGGTTAAAAATGGGGAGACCCACACGGCACATTATGTTTATCAGCAAATGATCAGGGTTGGAATAGTTCCGGACGTTTTTATGGTTTCAATAATGGTGAATGCATTTTGCAAGGACGGGAAAGTGGATGAAGCAGCGGGATTTGTGAAAAAAATGGAGAATTTGGGTGTTGAACCAAATATAGTGACCTACCATAGTTTGATTAATGGCTATGTTAGTCTGGGGGATGTGGAAGCTGCAAAAGGAGTGCTGAAATTCATGAGTGAAAAGGGGGTTTCAAGAAATGTGGTTACATATACCCTGTTGATCAAGGGTTATTGCAAACAATGTAAAATGGACGAGGCAGAGAAGGTGCTTAGAGGAATGCAGGAGGAGGCAGCTTTGGTTCCTGATGAGCGTGCTTATGGTGTCTTGATAGATGGTTATTGTCGAACTGGAAAAATAGATGATGCTGTTAGGCTTTTGGATGAGATGTTGAGATTGGGCCTGAAAACAAACTTATTTATTTGTAATTCATTGATTAATGGATATTGCAAACGTGGTGAAATTCATGAAGCAGAGGGAGTGATAACCCGTATGGTGGATTGGAACTTGAAGCCAGACTCTTATAGCTACAATACTCTACTGGATGGGTACTGTAGAGAAGGCCATACATCTGAAGCTTTCAACCTTTGTGACAAGATGCTTCAGGAAGGGATTGAACCAACCGTCTTAACTTATAATACTCTTCTTAAAGGCTTGTGCCGTGTGGGTGCCTTTGATGATGCTTTGCAAATTTGGCATTTGATGATGAAAAGGGGTGTGGCTCCTGATGAGGTTGGCTATAGTACTCTGCTTGATGGGTTATTCAAGATGGAAAATTTTGAAGGAGCTTCAACATTGTGGAAAGATATTCTAGCAAGAGGATTTACGAAAAGTAGGATTACTTTCAATACAATGATCAGCGGATTATGTAAGATGGGGAAAATGGTTGAAGCGGAGGAAATTTTTGACAAGATGAAGGATCTGGGATGTTCCCCTGATGGAATAACATACAGAACCCTAATTGATGGGTATTGTAAAGCCAGCAATGTTGGACAAGCTTTTAAAGTTAAGGGTGCCATGGAAAGGGAACCAATTTCACCTTCCATTGAGATGTACAATTCTCTTATTAGTGGACTTTTTAAGTCTAGGAGATTAGTTGAAGTGACAGATCTTCTCACTGAGATGGGCATAAGGGGATTGACCCCAAATATTGTTACTTATGGAGCCCTTATTGATGGTTGGTGCAAAGAAGGGATGCTGGATAAAGCTTTTAGTTCATATTTTGAGATGACTGAGAATGGGCTATCTGCCAATATAATTATATGCAGCACAATGGTCAGTGGCCTATATAGGCTTGGTAGGATTGATGAAGCAAATTTGCTGATGCAGAAAATGGTGGATCATGGTTTTTTTCCTGATCATGAATGTTTCCTCAAGTCTGACATTAGATATGCAGCCATTCAGAAAATTGCAGATTCTCTTGATGAAAGTTGTAAAACTTTTCTTCTACCCAACAATATTGTGTACAATATTGCTATTGCGGGCCTTTGCAAGACTGGGAAGGTTGATGATGCAAGAAGATTTTTCTCTATGTTATCACTGAAAGGATTTGTTCCGGATAATTTTACGTACTGTACCCTGATTCATGGCTATTCTGCGGCTGGTAATGTTGATGAAGCTTTTCGCTTAAGGGACGAGATGCTGAGAAGGGGTCTTGTTCCAAACATAGTTACATACAATGCTCTTATAAATGGCTTGTGCAAATCAGAAAACGTGGATCGAGCACAGAGGCTTTTCCATAAACTTCACCAGAAGGGATTGTTTCCAAATGTTGTTACCTATAATACATTGATCGATGGATATTGCAAGATTGGTAATATGGATGCAGCCTTCAAACTGAAAGATAAAATGATAGAAGAAGGGATTTCTCCTTCTGTTGTTACATACTCTGCCTTGATCAATGGTCTTTGTAAGCATGGAGATATAGAAAGATCTATGAAGCTTTTGAATCAAATGATCAAGGCAGGTGTGGACTCTAAGCTTATAGAATACTGTACTTTGGTTCAAGGTTACATTAGAAGTGGAGAGATGCAAAAGATACACAAACTTTATGATATGATGCATATCAGATGTCTTTCCACCACTGCTATTTCTCATAAACAGGTGGATTTAAGACCTCAAACTACAATGAAATGA 2820 0.4064 MHRYFSIFTPPLPSRLHLRRPIHLSRTLLWKLRDESHPAPPELVSRICRLVLLRRCNAISKLNFVFSDDIVDAVLRNLRLNPTASLGFFQFVSKQQNFRPNVKSYCKLVHILSRGRMYDETRAYLNQLVDLCKFKDRGNVIWDELVGVYREFAFSPTVFDMILKVYVEKGLTKNALYVFDNMGKCGRIPSLRSCNSLLNNLVKNGETHTAHYVYQQMIRVGIVPDVFMVSIMVNAFCKDGKVDEAAGFVKKMENLGVEPNIVTYHSLINGYVSLGDVEAAKGVLKFMSEKGVSRNVVTYTLLIKGYCKQCKMDEAEKVLRGMQEEAALVPDERAYGVLIDGYCRTGKIDDAVRLLDEMLRLGLKTNLFICNSLINGYCKRGEIHEAEGVITRMVDWNLKPDSYSYNTLLDGYCREGHTSEAFNLCDKMLQEGIEPTVLTYNTLLKGLCRVGAFDDALQIWHLMMKRGVAPDEVGYSTLLDGLFKMENFEGASTLWKDILARGFTKSRITFNTMISGLCKMGKMVEAEEIFDKMKDLGCSPDGITYRTLIDGYCKASNVGQAFKVKGAMEREPISPSIEMYNSLISGLFKSRRLVEVTDLLTEMGIRGLTPNIVTYGALIDGWCKEGMLDKAFSSYFEMTENGLSANIIICSTMVSGLYRLGRIDEANLLMQKMVDHGFFPDHECFLKSDIRYAAIQKIADSLDESCKTFLLPNNIVYNIAIAGLCKTGKVDDARRFFSMLSLKGFVPDNFTYCTLIHGYSAAGNVDEAFRLRDEMLRRGLVPNIVTYNALINGLCKSENVDRAQRLFHKLHQKGLFPNVVTYNTLIDGYCKIGNMDAAFKLKDKMIEEGISPSVVTYSALINGLCKHGDIERSMKLLNQMIKAGVDSKLIEYCTLVQGYIRSGEMQKIHKLYDMMHIRCLSTTAISHKQVDLRPQTTMK* 940
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0993 939 Pfam PPR repeat 362 394 IPR002885 -
Vvi18g0993 939 Pfam PPR repeat 710 738 IPR002885 -
Vvi18g0993 939 Pfam PPR repeat 328 358 IPR002885 -
Vvi18g0993 939 Pfam PPR repeat 221 253 IPR002885 -
Vvi18g0993 939 Gene3D Tetratricopeptide repeat domain 800 935 IPR011990 GO:0005515
Vvi18g0993 939 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 783 817 IPR002885 -
Vvi18g0993 939 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 818 852 IPR002885 -
Vvi18g0993 939 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 471 505 IPR002885 -
Vvi18g0993 939 SUPERFAMILY HCP-like 311 538 - -
Vvi18g0993 939 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 541 575 IPR002885 -
Vvi18g0993 939 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 225 259 IPR002885 -
Vvi18g0993 939 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 401 435 IPR002885 -
Vvi18g0993 939 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 155 189 IPR002885 -
Vvi18g0993 939 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 295 329 IPR002885 -
Vvi18g0993 939 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 748 782 IPR002885 -
Vvi18g0993 939 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 576 610 IPR002885 -
Vvi18g0993 939 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 853 887 IPR002885 -
Vvi18g0993 939 Pfam PPR repeat family 403 449 IPR002885 -
Vvi18g0993 939 Pfam PPR repeat family 754 796 IPR002885 -
Vvi18g0993 939 Pfam PPR repeat family 259 308 IPR002885 -
Vvi18g0993 939 Pfam PPR repeat family 508 554 IPR002885 -
Vvi18g0993 939 Pfam PPR repeat family 817 866 IPR002885 -
Vvi18g0993 939 Pfam PPR repeat family 575 624 IPR002885 -
Vvi18g0993 939 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 646 680 IPR002885 -
Vvi18g0993 939 Gene3D Tetratricopeptide repeat domain 428 499 IPR011990 GO:0005515
Vvi18g0993 939 Gene3D Tetratricopeptide repeat domain 500 569 IPR011990 GO:0005515
Vvi18g0993 939 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 3, MITOCHONDRIAL 256 472 - -
Vvi18g0993 939 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 713 747 IPR002885 -
Vvi18g0993 939 Gene3D Tetratricopeptide repeat domain 69 205 IPR011990 GO:0005515
Vvi18g0993 939 Gene3D Tetratricopeptide repeat domain 310 416 IPR011990 GO:0005515
Vvi18g0993 939 Gene3D Tetratricopeptide repeat domain 206 309 IPR011990 GO:0005515
Vvi18g0993 939 Gene3D Tetratricopeptide repeat domain 688 799 IPR011990 GO:0005515
Vvi18g0993 939 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 436 470 IPR002885 -
Vvi18g0993 939 Pfam PPR repeat 892 916 IPR002885 -
Vvi18g0993 939 Pfam PPR repeat 649 678 IPR002885 -
Vvi18g0993 939 Pfam PPR repeat 475 503 IPR002885 -
Vvi18g0993 939 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 611 645 IPR002885 -
Vvi18g0993 939 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 190 224 IPR002885 -
Vvi18g0993 939 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 366 400 IPR002885 -
Vvi18g0993 939 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 331 365 IPR002885 -
Vvi18g0993 939 NCBIfam pentatricopeptide repeat 229 261 IPR002885 -
Vvi18g0993 939 NCBIfam pentatricopeptide repeat 475 503 IPR002885 -
Vvi18g0993 939 NCBIfam pentatricopeptide repeat 508 541 IPR002885 -
Vvi18g0993 939 NCBIfam pentatricopeptide repeat 613 646 IPR002885 -
Vvi18g0993 939 NCBIfam pentatricopeptide repeat 297 331 IPR002885 -
Vvi18g0993 939 NCBIfam pentatricopeptide repeat 785 819 IPR002885 -
Vvi18g0993 939 NCBIfam pentatricopeptide repeat 403 437 IPR002885 -
Vvi18g0993 939 NCBIfam pentatricopeptide repeat 579 611 IPR002885 -
Vvi18g0993 939 NCBIfam pentatricopeptide repeat 262 295 IPR002885 -
Vvi18g0993 939 NCBIfam pentatricopeptide repeat 649 681 IPR002885 -
Vvi18g0993 939 NCBIfam pentatricopeptide repeat 369 402 IPR002885 -
Vvi18g0993 939 NCBIfam pentatricopeptide repeat 855 885 IPR002885 -
Vvi18g0993 939 NCBIfam pentatricopeptide repeat 750 784 IPR002885 -
Vvi18g0993 939 NCBIfam pentatricopeptide repeat 820 854 IPR002885 -
Vvi18g0993 939 NCBIfam pentatricopeptide repeat 543 576 IPR002885 -
Vvi18g0993 939 NCBIfam pentatricopeptide repeat 193 226 IPR002885 -
Vvi18g0993 939 NCBIfam pentatricopeptide repeat 715 748 IPR002885 -
Vvi18g0993 939 NCBIfam pentatricopeptide repeat 439 472 IPR002885 -
Vvi18g0993 939 NCBIfam pentatricopeptide repeat 334 364 IPR002885 -
Vvi18g0993 939 SUPERFAMILY HCP-like 618 887 - -
Vvi18g0993 939 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 506 540 IPR002885 -
Vvi18g0993 939 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 260 294 IPR002885 -
Vvi18g0993 939 Gene3D Tetratricopeptide repeat domain 570 687 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0993 Vvi-Chr18 10109057 10111876 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g0993 751 930 Glycosyltransferase AT1G05670 28.333 9.87e-24 105
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0993 - K17964 vvi:100259083 1879.76