LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vvi18g0992	ATGGCCACTGCTGCTGTCACGGCCACTGCTTCCAAGTCCTCCAAGTGGTTCTCCAGCAAAACTACTAAACTCAGCCTCCCTCGCGTTGGATCCAAATCCAAATCCTCATCCTCGAGCCCATGCCCTTCTCCATCTCTAGTCCTTGGACCAAAGAAGAGCTCAAAAGAAGATGAGCTCCGACAAGTTTTTGGTTACTTCGACAGTGATGGAGATGGGAGGATATCGGGTGAGGAGCTTAGAGTTTACTTCCAGTCTATCGGGGAGTCCATGTCGCATGAGGAGGCGCAAAAAGTGATTGGCGATTTCGATGTCGATGGTGACAGCTTACTAGAATTTCAAGACTTTGTTCGATTGATGGAGCAAAGCAGCGAGATGGATGATGACCTTAAGAGGGCTTTCCAGATGTTCGAAGTGGAAAAGGGTTGCGGGTGCATCACCCCAAAAGGACTGCAACAGATGTTCAACAGGCTGGGAGATTCCAAAACTTACGAGGAGTGTGTGGCAATGATTCGAGTGTTTGATCTTGATGGCAACGGAGTGCTCGACTTCCATGAGTTTCACCGGATGATGACTTGA	576	0.4896	MATAAVTATASKSSKWFSSKTTKLSLPRVGSKSKSSSSSPCPSPSLVLGPKKSSKEDELRQVFGYFDSDGDGRISGEELRVYFQSIGESMSHEEAQKVIGDFDVDGDSLLEFQDFVRLMEQSSEMDDDLKRAFQMFEVEKGCGCITPKGLQQMFNRLGDSKTYEECVAMIRVFDLDGNGVLDFHEFHRMMT*	192

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vvi18g0992	191	CDD	EFh	58	119	IPR002048	GO:0005509
	Vvi18g0992	191	MobiDBLite	consensus disorder prediction	1	54	-	-
	Vvi18g0992	191	PANTHER	CALCIUM BINDING PROTEIN	110	190	-	-
	Vvi18g0992	191	ProSitePatterns	EF-hand calcium-binding domain.	67	79	IPR018247	-
	Vvi18g0992	191	Gene3D	-	49	123	-	-
	Vvi18g0992	191	Pfam	EF-hand domain pair	57	119	IPR002048	GO:0005509
	Vvi18g0992	191	Gene3D	-	124	191	-	-
	Vvi18g0992	191	MobiDBLite	consensus disorder prediction	1	44	-	-
	Vvi18g0992	191	ProSiteProfiles	EF-hand calcium-binding domain profile.	161	191	IPR002048	GO:0005509
	Vvi18g0992	191	SUPERFAMILY	EF-hand	53	190	IPR011992	-
	Vvi18g0992	191	CDD	EFh	128	191	IPR002048	GO:0005509
	Vvi18g0992	191	ProSitePatterns	EF-hand calcium-binding domain.	174	186	IPR018247	-
	Vvi18g0992	191	Pfam	EF-hand domain pair	143	190	IPR002048	GO:0005509
	Vvi18g0992	191	FunFam	Calmodulin 1	44	122	-	-
	Vvi18g0992	191	ProSiteProfiles	EF-hand calcium-binding domain profile.	90	125	IPR002048	GO:0005509
	Vvi18g0992	191	ProSiteProfiles	EF-hand calcium-binding domain profile.	54	89	IPR002048	GO:0005509
	Vvi18g0992	191	SMART	efh_1	94	122	IPR002048	GO:0005509
	Vvi18g0992	191	SMART	efh_1	165	191	IPR002048	GO:0005509
	Vvi18g0992	191	SMART	efh_1	58	86	IPR002048	GO:0005509

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vvi18g0992	Vvi-Chr18	10100755	10101330	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vvi18g0992	10	191	EF-hand Containing Proteins	AT3G50770	54.822	4.58e-64	194

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vvi18g0992	K13448		-	vvi:100253943	345.895