Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0987 ATGGATATGGAGCTGGATAAGATCAGCAACTTGCCAGGACATATTATAGATAAAATTTTGTCACTGTTGTCAATTAGGGATGCTGTGAGGATGAGTGTCTTGTCAAGCAAGTGGAGGTTCAAATGGGTTACCCTTCCATATCTCGTGTTTGATAATCAGTGTGTTTCAATTTCTTCCCAAGATCAAACGCTTGTCAAGAATAAGCTTGTGAACATTATTGATCATGTCCTCTTGCTTCACACTGGCCCAATACACAAGTTCAGGTTGTCTCACCGAGATTTCTTAGGTGGTAGTGACATTGATCGGTGGATTCTATATTTATCAAGAACCCCTATCAGAGAATTCATACTTGAAATATGGAAGGGTCAACACTACAAGCTACCTTCTTGCTTATACAATTGCCAAAGTTTGATTCATTTAGAGCTATTTAATTCTTTGCTAAAGCCTCCTCCAACGTTCAAAGGATTCATGAGCTTGAAGAGCCTTGATCTTCAGCATATTATCATGGCCCAAGATGCATTTGAAAATCTGATTTCTAGCTGCCCTCTGCTTGAGAAGTTTACATTGATGAACTTTGATGGTTTCACCCACCTTAATATTCATGCTCCAAATCTCCAATTCTTTGACACTGGAGGTGTGTTTTATGATGTTAATTTCAAGAATACCTTCCTTTTAGCTACAGTTTCCATTGGCTTGTATGTGGATATAACAAATGATAAAAATTTGGCTGATGGAAATTCTAGAAATTTGGTCAAGTTTTTTGCCCATCTCCCCCGTATCCAGAGGCTTGAGATACAGAGTTATTTTCTAAAGTATTTAGCTGCTGGCAATGTGCCAGGGAAGCTGCCTGCTCCATGTATTGATCTGACTCATCTTTCCATACGCATAAACTTCAGTTCTGTGGAGGAGAATTTAACTGCTCTTTGCCTCCTAAGAAGTTCCCCTAATCTACAAGAACTAGAAATGTTGGCTCGGCCAGAGGAACAAACTCTTCTGGAAACATCCACAACCCTTTGGAAAAAAGAACACTGGAATTACTCCTTTGCCCACCTGCGGGTTGTGAAATTAACTGGCATCTCAGGTGTTGGACCCCAATTGGATTTCATCAACTTTCTGCTTGCATACTCACCTGTGCTTGAGAAGATGACTGTTAAACCTGCTTCTGGGGACGGAGCATGGGAGTTGATAAAGGACTTGCTGCGCTTCCGACGGGCTTCAGTTCGAGCAGAAATCATTTACTTGGATCCCTGA 1251 0.4093 MDMELDKISNLPGHIIDKILSLLSIRDAVRMSVLSSKWRFKWVTLPYLVFDNQCVSISSQDQTLVKNKLVNIIDHVLLLHTGPIHKFRLSHRDFLGGSDIDRWILYLSRTPIREFILEIWKGQHYKLPSCLYNCQSLIHLELFNSLLKPPPTFKGFMSLKSLDLQHIIMAQDAFENLISSCPLLEKFTLMNFDGFTHLNIHAPNLQFFDTGGVFYDVNFKNTFLLATVSIGLYVDITNDKNLADGNSRNLVKFFAHLPRIQRLEIQSYFLKYLAAGNVPGKLPAPCIDLTHLSIRINFSSVEENLTALCLLRSSPNLQELEMLARPEEQTLLETSTTLWKKEHWNYSFAHLRVVKLTGISGVGPQLDFINFLLAYSPVLEKMTVKPASGDGAWELIKDLLRFRRASVRAEIIYLDP* 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0987 416 SUPERFAMILY RNI-like 112 322 - -
Vvi18g0987 416 ProSiteProfiles F-box domain profile. 5 39 IPR001810 GO:0005515
Vvi18g0987 416 PANTHER F-BOX PROTEIN-LIKE 6 388 - -
Vvi18g0987 416 SUPERFAMILY F-box domain 5 49 IPR036047 GO:0005515
Vvi18g0987 416 Pfam Leucine Rich Repeat 158 182 IPR013101 -
Vvi18g0987 416 Gene3D Ribonuclease Inhibitor 105 363 IPR032675 -
Vvi18g0987 416 SMART 9598neu4hmm 345 414 IPR006566 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0987 Vvi-Chr18 10047631 10049415 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g0987 6 219 EF-hand Containing Proteins AT5G41840 24.167 3.59e-08 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0987 - - vvi:100260820 835.484