Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0986 ATGGCCATGGAAACTCCACTCCTCAATAACCATAATGATGAAGACGTGGAAAAGCCTGTGAGCTTTCCCAGGAAGTTCTGTGCCGAGTCCAAGAAGCTATGGAAACTAGCGGGCCCGGCAATTTTCACGGCCATTTGTCAATACTCCCTTGGTGCACTCACGCAGACTTTTGCTGGCTTAGTCGGCGAGACGGAGCTCGCTGCCGTCTCCGTCGAGAACTCCGTTATCGCGGGTCTCGCCTTTGGTGTCATGTTAGGGATGGGGAGTGCCTTGGAGACTCTATGTGGCCAAGCTTACGGTGCCGGAAAGATCAGAATGTTGGGGATATACATGCAAAGATCATGGGTCATTTTGTTGACTACTGCCTGCTGTTTGGTGCCCATCTATGTTTTTGCTCCTCCCATTCTCGAGCTCATTGGAGAGACTACCCAGATTTCTGAGGCTGCGGGTCAATTTGCTTTATGGATGATCCCGCAATTGTTCGCTTATGCGTTGAATTTTCCGATACAAAAGTTCTTGCAAGCACAGAGGAAAGTGTTTGTGATGGCCTGGATATCAGTAGTGGTGCTGGTGATACATGCAGTACTTAGCTGGTTACTGATATTGAAACTGGGGTATGGCTTAGTAGGAGCAGCGGTCATGTTGAACCTATCGTGGTGGCTGATTGTTATTTCACAGCTTTTATACATTTTCATCACAACATCAGATGGTGCTTGGAGCGGATTCTCAATGCTGGCATTTGCTGATTTGTATGGATTTGTCAAGCTCTCTCTGGCTTCTGCTGTTATGTTATGCTTGGAGTTCTGGTACTTGATGATACTGGTGGTGATAACAGGTCGTCTGAAGAACCCTCTGATACCAGTTGATGCCATCTCTATCTGCATGAACATACAAGGATGGGATGCAATGATTGCTCTTGGATTCAATGCTGCCATAAGTGTGAGAGTATCCAATGAACTTGGGGCTGGCAACGCTCCATCAGCAAAATTTGCAGTTGTAGTGGTTTCCATCACATCCATGACTATTGGAGTGATTTGCATGGCTGTAGTGTTTGCAACAAGAGATGTTTTCCCCTACCTTTTCACAACAAGCACTGCAGTTGCAGACTTAACTACCAAACTTGCTACCTTGCTTGGTGTCACTGTCCTTCTGAACAGTCTTCAACCAGTTTTATCAGGGGTTGCTGTTGGAGCTGGATGGCAACATATTGTTGCATACATCAACATTGGGTGCTACTATCTCGTTGGATTACCAGCTGGCCTACTCTTGGGATTCAAATTTGGTCTCGGAGCAGAGGGTATTTGGGGAGGAATGATAGGAGGCATCTGTTTGCAGACCATAATACTGGTGGGGATCACTTCATGGACAAACTGGAATAAGGAAGCTGAAGAGGCAGAAAGTCGTGTGAAGAAATGGGGAGGATCTGCCGGTGAAAACTGA 1440 0.4674 MAMETPLLNNHNDEDVEKPVSFPRKFCAESKKLWKLAGPAIFTAICQYSLGALTQTFAGLVGETELAAVSVENSVIAGLAFGVMLGMGSALETLCGQAYGAGKIRMLGIYMQRSWVILLTTACCLVPIYVFAPPILELIGETTQISEAAGQFALWMIPQLFAYALNFPIQKFLQAQRKVFVMAWISVVVLVIHAVLSWLLILKLGYGLVGAAVMLNLSWWLIVISQLLYIFITTSDGAWSGFSMLAFADLYGFVKLSLASAVMLCLEFWYLMILVVITGRLKNPLIPVDAISICMNIQGWDAMIALGFNAAISVRVSNELGAGNAPSAKFAVVVVSITSMTIGVICMAVVFATRDVFPYLFTTSTAVADLTTKLATLLGVTVLLNSLQPVLSGVAVGAGWQHIVAYINIGCYYLVGLPAGLLLGFKFGLGAEGIWGGMIGGICLQTIILVGITSWTNWNKEAEEAESRVKKWGGSAGEN* 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0986 479 NCBIfam MATE family efflux transporter 39 435 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Vvi18g0986 479 CDD MATE_eukaryotic 29 464 IPR045069 GO:0042910|GO:1990961
Vvi18g0986 479 PANTHER MULTIDRUG RESISTANCE PROTEIN 24 458 - -
Vvi18g0986 479 Pfam MatE 39 199 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Vvi18g0986 479 Pfam MatE 260 420 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0986 Vvi-Chr18 10039982 10043834 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0986 K03327 - vvi:100255747 919.457