LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vvi18g0980	ATGGCGAAATCCAGCGCTGATGACGAGGAGCTTAGGCGAGCTTGCGAGGCGGCCATCGAGGGCACCAAGCAGAAGATCGTCATGTCGATCCGTGTTGCCAAGAGCCGCGGGATCTGGGGCAAATCTGGCAAATTAGGTCGCAATATGGCCAAACCTAGGGTTCTTGCACTGTCAACAAAAGCAAAGGCTCAGCGTACTAAAGCTTTTCTTCGTGTCTTAAAATATTCTACTGGAGGAGTTCTTGAGCCTGCTAAATTGTACAAGTTAAAGCATCTCTCCAAGGTGGAAGTTATAGCTAATGATCCCAGTGGGTGTACGTTTATGCTGGGATTTGATAATCTCAGAAGCCAGAGTGTCGCTCCACCTCAGTGGACAATGCGCAATATTGATGACAGGAATCGCCTGCTACTTTGCATCTTAAATATCTGCAAAGATGTGTTGGGTCGTCTTCCCAAAGTTGTTGGTATTGATGTTGTAGAGATGGCTCTTTGGGCTAAGGAAAATAAACCTACAGTTACTGCTCAAGGGAATCTGCATGATGGGCCTATACCAGCTATGGTGACAGAAACCGACTTGAAAGTTTCTGTTGAAAGAGAACTTGTAACCCAAGCTGAGGAGGATGATATGGAGGCTCTTCTTGGCAATTATGTCATGGGTATTGGTGAAGCTGAGGCCTTTTCTGAAAGGTTGAAGAGAGAACTTCTTGCCTTGGAAGCAGCAAATGTGCATGCCATTTTGGAATCTGAACCATTGGTCGATGAGGTACTGCAAGGCCTCGAGACAGCTACAAATTGTGTTGATGATATGGATGAATGGTTAGGCATTTTCAATGTGAAACTTAGACACATGAGAGAGGATATTGAGTCGATAGAAACCCGCAATAACAAGTTGGAGATGCAATCTGTAAACAATAAAGCACTCATTGAGGAACTTGAAAAGCTTCTTGAACGATTGCGAGTCCCTTCTGAGTATGCAGCATGTCTAACTGGAGGTCCCTTTGATGAGGCACGCATGCTGCAAAACATTGAAGCATGTGAGTGGCTGACTGGTGCTCTGCGTGGTCTTGAAGTACCTAACTTGGATCCTGCCTATGCAAACATACGAGCTGTTAAAGAAAAACGGGCAGAACTTGAAAAACTAAAAACTACATTTGTTAGGAGAGCATCTGAATTCTTAAGAAACTACTTCGCCAGTTTGGTGGATTTTATGATAAGTGATAAGAGTTACTTCTCTCAGCGAGGACAGTTGAAGAGGCCAGACCATGCTGATCTTCGGTATAAATGCAGGACTTATGCTCGCCTTCTACAACACTTAAAGAGTCTTGATAAGAATTGCTTGGGTCCATTGAGAAAAGCCTATTGTAGCTCCCTTAACTTGCTTCTTCGTCGAGAGGCTCGTGAGTTTGCAAATGAGCTTCGTGCTAGTACCAAAGCATCAAGAAATCCAACTGTCTGGCTTGAAGCTTCTACAGGCTCTGGTCAAAATATGAACAACACGGACACTTCAAATGTTTCGGATGCTTATGCGAAAATGCTGACAATTTTCATCCCACTTCTTGTAGATGAGAGTTCTTTTTTTGCACACTTCATGTGCTTTGAGGTTCCTGCATTGGTTCCTCCGGGGGGTCATGCCAATGGTAATAAAACGGGATCCAATGACGATGACGCCAATGATGATGATTTGGGTATTTTGGACATTGATGAAAATGACAACAAAACTGGCAAAAATTCTGCAGAGCTGGGAGCATTAAATGAATCTCTTCAGGATTTGCTTGACGGTATCCAAGAAGACTTTTATGCAGTGGTGGATTGGGCATACAAGATTGATCCTTTGCGCTGCATATCAATGCATGGGATTACAGAACGGTATATTTCTGGTCAGAAAGCTGATGCAGCAGGATTTGTACGCCTCTTGCTTGATGATCTGGAGTCAAGAATTTCTATGCAGTTCGGCCGTTTTGTTGATGAAGCTTGTCACCAGATTGAAAGAAATGAACGTAACGTTCGGCAGACGGGTGTATTATCATATATTCCCAGATTTGCAACTCTTGCAACCCGTATGGAGCAGTACATCCAGGGACAATCTAGAGATTTGGTTGATCAGGCATACACAAAATTTGTTACCATAATGTTTGTGACTTTGGAGAAAATTGCACAAACCGACCCAAAATATGCTGATATTTTGCTTTTGGAGAATTTTGCAGCTTTCCAGAATAGTTTGTATGACCTAGCCAATGTTGTTCCCACTTTAGCCAAATTCTATCACCAGGCCAGTGAATCTTATGAACAAGCTTGCATGCGGCATATTAGCATGATCATATACATTCAATTCGAACGGCTTTTCCAGTTTGCTCGAAGAGCTGAGGATTTGATGTTCACCATCTCACCAGAAGAGATCCCTTTCCAGCTGGGATTGTCAAAAATGGATCTTCGGAAGATGTTGAAATCCAGTTTATCTGGGGTTGACAAGTCCTTTAATGGAATGTATAAGAGATTGCAGAAGAATTTAACTTCAGAAGAACTTTTGCCATCTTTGTGGGATAAATGCAAGAAGGAGTTTCTGGACAAATATGATAGCTTCGCACAACTGGTTGCCAAGATTTATCCTACCGAGACCATTCCATCTGTAGCAGAAATGAGAGAAATTCTGGCCAACATGTAG	2661	0.4292	MAKSSADDEELRRACEAAIEGTKQKIVMSIRVAKSRGIWGKSGKLGRNMAKPRVLALSTKAKAQRTKAFLRVLKYSTGGVLEPAKLYKLKHLSKVEVIANDPSGCTFMLGFDNLRSQSVAPPQWTMRNIDDRNRLLLCILNICKDVLGRLPKVVGIDVVEMALWAKENKPTVTAQGNLHDGPIPAMVTETDLKVSVERELVTQAEEDDMEALLGNYVMGIGEAEAFSERLKRELLALEAANVHAILESEPLVDEVLQGLETATNCVDDMDEWLGIFNVKLRHMREDIESIETRNNKLEMQSVNNKALIEELEKLLERLRVPSEYAACLTGGPFDEARMLQNIEACEWLTGALRGLEVPNLDPAYANIRAVKEKRAELEKLKTTFVRRASEFLRNYFASLVDFMISDKSYFSQRGQLKRPDHADLRYKCRTYARLLQHLKSLDKNCLGPLRKAYCSSLNLLLRREAREFANELRASTKASRNPTVWLEASTGSGQNMNNTDTSNVSDAYAKMLTIFIPLLVDESSFFAHFMCFEVPALVPPGGHANGNKTGSNDDDANDDDLGILDIDENDNKTGKNSAELGALNESLQDLLDGIQEDFYAVVDWAYKIDPLRCISMHGITERYISGQKADAAGFVRLLLDDLESRISMQFGRFVDEACHQIERNERNVRQTGVLSYIPRFATLATRMEQYIQGQSRDLVDQAYTKFVTIMFVTLEKIAQTDPKYADILLLENFAAFQNSLYDLANVVPTLAKFYHQASESYEQACMRHISMIIYIQFERLFQFARRAEDLMFTISPEEIPFQLGLSKMDLRKMLKSSLSGVDKSFNGMYKRLQKNLTSEELLPSLWDKCKKEFLDKYDSFAQLVAKIYPTETIPSVAEMREILANM*	887

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vvi18g0980	886	Pfam	Exocyst complex component Sec3	581	869	IPR019160	GO:0000145\|GO:0006887
	Vvi18g0980	886	Pfam	Exocyst complex component Sec3	223	500	IPR019160	GO:0000145\|GO:0006887
	Vvi18g0980	886	Coils	Coil	280	317	-	-
	Vvi18g0980	886	MobiDBLite	consensus disorder prediction	543	570	-	-
	Vvi18g0980	886	SMART	Sec3_PIP2_bind_2	48	146	IPR028258	-
	Vvi18g0980	886	Pfam	Exocyst complex component SEC3 N-terminal PIP2 binding PH	50	144	IPR028258	-
	Vvi18g0980	886	PANTHER	SEC3/SYNTAXIN-RELATED	49	877	-	-

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vvi18g0980	1	886	EF-hand Containing Proteins	AT1G47550	87.064	0.0	1592

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vvi18g0980	K19983		-	vvi:100255739	1708.35