Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0977 ATGTTTGTTGCAGCTTCTTTGCTCATTTTCACTTATCACTCTATTTTTTTTATTCTCTCTAGCCAAGAAATGAATGGATACAAGGAGAAGTTTGGTGGTCTTAGAGATGGATATTATATTAATGGACAGTGTGCCATCATCATGTTTGATGTCACTGCTCATCTGACATACAAAAATGCTCCAACATGGCATCGGGATCTCTATAGGGTGTGTGAGAATATTCCAATTGTTTTATGTGGAAACAAGATGGATGTGAAAAATAGGCAGGTCAAAGCAAAGCAGGTTACTTCCCATAGGAAAAATAATCTCCAGTGTTGTGAAATCTCTGCAAAGAGCAATTATAATTTTGAGATGCCCTTCTTGTACCTTGCTCGAAAATTTGCAGGAGATGTCAATCTCCACCTTGTTGGATCACTTGCCCTTGCTCCTCCAGAAGTACACATTGACTTGGCTCCACGCAAACCCTTCATACCTACCCTTCATATCCATTAG 492 0.3943 MFVAASLLIFTYHSIFFILSSQEMNGYKEKFGGLRDGYYINGQCAIIMFDVTAHLTYKNAPTWHRDLYRVCENIPIVLCGNKMDVKNRQVKAKQVTSHRKNNLQCCEISAKSNYNFEMPFLYLARKFAGDVNLHLVGSLALAPPEVHIDLAPRKPFIPTLHIH* 164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0977 163 PANTHER RAN GTPASE 23 154 IPR002041 GO:0003924|GO:0005525|GO:0006913
Vvi18g0977 163 SMART ran_sub_2 1 160 - -
Vvi18g0977 163 Gene3D - 23 155 IPR027417 -
Vvi18g0977 163 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 29 128 IPR027417 -
Vvi18g0977 163 SMART ras_sub_4 24 130 - -
Vvi18g0977 163 PRINTS GTP-binding nuclear protein Ran/Tc4 family signature 50 71 IPR002041 GO:0003924|GO:0005525|GO:0006913
Vvi18g0977 163 PRINTS GTP-binding nuclear protein Ran/Tc4 family signature 30 48 IPR002041 GO:0003924|GO:0005525|GO:0006913
Vvi18g0977 163 PRINTS GTP-binding nuclear protein Ran/Tc4 family signature 86 104 IPR002041 GO:0003924|GO:0005525|GO:0006913
Vvi18g0977 163 PRINTS GTP-binding nuclear protein Ran/Tc4 family signature 124 146 IPR002041 GO:0003924|GO:0005525|GO:0006913
Vvi18g0977 163 SMART rab_sub_5 6 130 - -
Vvi18g0977 163 ProSiteProfiles small GTPase Ran family profile. 1 127 IPR002041 GO:0003924|GO:0005525|GO:0006913
Vvi18g0977 163 Pfam Ras family 28 126 IPR001806 GO:0003924|GO:0005525
Vvi18g0977 163 ProSiteProfiles small GTPase Rab1 family profile. 1 163 - -
Vvi18g0977 163 FunFam GTP-binding nuclear protein 48 161 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0977 Vvi-Chr18 9943150 9945207 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0977 K07936 - ppp:112273699 223.787