Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0975 ATGGCATTAGGGTCTGGAACGGCTCGTTCTGTGAGTTTCTGTTCACTCCCTCCCATTGGGAGCTTAATTCTACCTCCACTTCAGAAGGTGACATTCAATATTTCCCAGGGCTCGTTTCAGAAACCAGTGGGTATCGTCTTTGATCTTGGCTGGAGATTTTATGCTAAAAGGAGGAAGAAATACTTGGTGGTGGTTTCAAGGGTTTCTCAGAGAGAAGTTGTCAATGTTCAAGAAGAAGATTTAAAGCGTTTATGCAGACAAGGAAATGTGGAAGCAGCTCTTCATGTAATTGATGAAATGGAGAGGAATGGGGTTACTGTGTCCGCGCTTGGTCTTGCTGAATTGTTGCAAGTCTGTATAGATTTGAAGTTGTTGGAAGTTGGGAAAAGGGCTCATGAGTTAGTAATGAGGCTTTCATCAAATCCCAGTGTTATTGTCTTCAACAAGTTGTTGGAGATGTACTTTGATTTAGGTGATACCCGAAGTGCTTGCCGAGTATTTGAAGAAATGCGGGGCAGAACCTTGGACTCTTGGAATAGGATGATCCTGGGTTTGGTGAAAAATGGGGAGGGAGAAGAAGCGCTTGCAATATTTTCCAAGTTAAAAAAAGATGGAATAGAGCCAGATGGATCAACTTTTATTGGTGTTCTATCTGCCTGTGAATGTTTAGGGGCAGTGGAGGAAGGACTAGCACATTTTAACTCTATGAGTACTGATTATGGGATCACTCCCTCCATGGAGCATTTTGCGATCATAGTTGATCTTTTTGGAAGGTTACAGAAGATAGCAGAGGCAAAGGAGTTTATTGCAAGTATGCCACTTGAACCAAGCTCCATGATTTGGCAGACACTGCAAAAATACTTAAAGACTGAGCGGGTTGATGAACCGGCTCCTCTCACAACAGGTTCTGGTTTGAAACTCAGTCATAAAAAAAGGGTGAAGAGCAATTTTGTTTCAAAGCAAAAAAATGCGAGTCCTGAGAAGAGCAAGGCTTATGAAAAGCTAAGGTCTTTACATAAAGGGGTGAAGGAAGCTGGTTATGTGTCGGATACTAGGTATGTGCTCCATGATCTTGACCAAGAAGCAAAAGAGAAATCCTTACTCTATCACAGTGAAAGATTAGCCATTGCTTATGGTCTCATCAGTACTCCTCCAGGAACCACCCTGAGGATAATCAAGAACCTAAGGATTTGTGGAGATTGTCACAATTTCATCAAAATCCTGTCAAACATTGAAAAGCGAGAGATTATTGTGAGGGATAATAAAAGGTTTCACCACTTCAGGGATGGCAAGTGCTCATGTGGAGATTATTGGTGA 1317 0.4199 MALGSGTARSVSFCSLPPIGSLILPPLQKVTFNISQGSFQKPVGIVFDLGWRFYAKRRKKYLVVVSRVSQREVVNVQEEDLKRLCRQGNVEAALHVIDEMERNGVTVSALGLAELLQVCIDLKLLEVGKRAHELVMRLSSNPSVIVFNKLLEMYFDLGDTRSACRVFEEMRGRTLDSWNRMILGLVKNGEGEEALAIFSKLKKDGIEPDGSTFIGVLSACECLGAVEEGLAHFNSMSTDYGITPSMEHFAIIVDLFGRLQKIAEAKEFIASMPLEPSSMIWQTLQKYLKTERVDEPAPLTTGSGLKLSHKKRVKSNFVSKQKNASPEKSKAYEKLRSLHKGVKEAGYVSDTRYVLHDLDQEAKEKSLLYHSERLAIAYGLISTPPGTTLRIIKNLRICGDCHNFIKILSNIEKREIIVRDNKRFHHFRDGKCSCGDYW* 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0975 438 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 174 208 IPR002885 -
Vvi18g0975 438 Pfam Pentatricopeptide repeat domain 142 171 IPR002885 -
Vvi18g0975 438 Gene3D Tetratricopeptide repeat domain 76 237 IPR011990 GO:0005515
Vvi18g0975 438 NCBIfam pentatricopeptide repeat 146 172 IPR002885 -
Vvi18g0975 438 NCBIfam pentatricopeptide repeat 82 108 IPR002885 -
Vvi18g0975 438 NCBIfam pentatricopeptide repeat 177 209 IPR002885 -
Vvi18g0975 438 Pfam PPR repeat 84 105 IPR002885 -
Vvi18g0975 438 Pfam PPR repeat family 177 220 IPR002885 -
Vvi18g0975 438 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 84 284 IPR046960 GO:0003723|GO:0009451
Vvi18g0975 438 FunFam Uncharacterized protein 110 225 - -
Vvi18g0975 438 Pfam DYW family of nucleic acid deaminases 346 438 IPR032867 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0975 Vvi-Chr18 9932714 9934030 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g0975 81 438 Glycoside Hydrolase AT3G49170 35.062 1.23e-74 248
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0975 - - vvi:104882543 849.351