Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0969 ATGTTAGAAGAAACGAACAGTATACCGAGACCCAAGTACCGCAATATCATGCATTCGGATCCCAATCTTTCCTCTTCAATCCCAACCGAGGATGATTACCCCATCCGCAACAGCAGTGCTTCCGCCGCCAGTCCTGGTTTCTACGACAACCGCCTGAGCGGAGAAGGCTCTCCAATGACCATGTCTCCTTGGAACCAGACTTCTTCTGAGGCCAAATCCTCATGGTCCCGATTCGAAGAAAACCTGCCTCAGAATGGCCTCATCGGATCCCTGACTCGCGAAGAAGGTCATATTTACTCCTTGGCCGCTACCGGCGAGCTCTTGTACACAGGCTCAGATAGCAAGAATATTCGTGTTTGGAAGAATCTGAAAGAGTTTTCTGGATTCAAATCCAACAGTGGACTTGTAAAAGCCATAGTAATCTCGGGTGAGAAGATTTTCACTGGCCACCAAGACGGAAAGATTAGAGTTTGGAAGGTCTCCCCCAAGAACGCCAGCGTTCACAAACGAGCAGGAACTTTACCAACTTTAAAGGACATATTCAAGAGCTCAATCAATCCAAGCAATTACGTTGAGGTGAGACGGCGCCGTTCTGCTCTCTGGATCAGGCACTCCGATGCCATATCGTGTTTGAGCTTGAACGAAGAGCAGGGCCTTCTGTACTCGGCTTCCTGGGACAGAACCTTTAAGGTTTGGCGAATATCTGATTCCAAGTGTCTGGAATCCATCAGTGCGCACGACGACGCCGTCAACTCCGTAGTGGCCAGCAGTGAGGGCATGGTATTCACCGGCTCCGCCGATGGCTCCGTTAAAGTTTGGCGAAGGGAGTTGCATGGGAAAGGGACAAAGCACGCGTTCGTACAAACGCTTCTGAAGCAAGAATGCGCGGTGACGGCGTTATGCGTGAACACGTCGGGCTCGGTGGTGTACTGCGGGTCCTCCGATGGACTGGTCAACTTCTGGGAACGTGAGAAGCAGTTATCACACGGTGGGGTGCTGAGAGGGCACAAGGTGGCGGTCCTCTGCCTCGCGGCCGCAGCGAATCTGGTGTTCAGCGGGTCTGCGGATAAGACCATATGCGTATGGAGGAGGGAAGGAGTGGTACACACGTGTCTCTCTGTGTTGACTGGTCACACAGGACCAGTCAAATGTTTAGCGGTTGGGGAGGACAAGGAATCCACGGCTAAGAATCAACGCTGGGTAGTGTACAGCGGGAGTCTTGACAAGTCAGTCAAGGTGTGGAGCGTTTCGGACATGGGGATTGATCCGCAACAACAGACTGTGGAGGGTGGCGTCTCCTCATTCCCATCGGAACAGACCGATTCCGTTTCTTCTCCAGGCGGAGGAGGCGGCAGCCACAAGAAGAGGTGA 1371 0.5274 MLEETNSIPRPKYRNIMHSDPNLSSSIPTEDDYPIRNSSASAASPGFYDNRLSGEGSPMTMSPWNQTSSEAKSSWSRFEENLPQNGLIGSLTREEGHIYSLAATGELLYTGSDSKNIRVWKNLKEFSGFKSNSGLVKAIVISGEKIFTGHQDGKIRVWKVSPKNASVHKRAGTLPTLKDIFKSSINPSNYVEVRRRRSALWIRHSDAISCLSLNEEQGLLYSASWDRTFKVWRISDSKCLESISAHDDAVNSVVASSEGMVFTGSADGSVKVWRRELHGKGTKHAFVQTLLKQECAVTALCVNTSGSVVYCGSSDGLVNFWEREKQLSHGGVLRGHKVAVLCLAAAANLVFSGSADKTICVWRREGVVHTCLSVLTGHTGPVKCLAVGEDKESTAKNQRWVVYSGSLDKSVKVWSVSDMGIDPQQQTVEGGVSSFPSEQTDSVSSPGGGGGSHKKR* 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0969 456 Gene3D - 64 192 IPR015943 GO:0005515
Vvi18g0969 456 Gene3D - 285 449 IPR015943 GO:0005515
Vvi18g0969 456 SUPERFAMILY WD40 repeat-like 87 420 IPR036322 GO:0005515
Vvi18g0969 456 Gene3D - 193 284 IPR015943 GO:0005515
Vvi18g0969 456 PRINTS G protein beta WD-40 repeat signature 402 416 IPR020472 -
Vvi18g0969 456 PRINTS G protein beta WD-40 repeat signature 261 275 IPR020472 -
Vvi18g0969 456 PRINTS G protein beta WD-40 repeat signature 220 234 IPR020472 -
Vvi18g0969 456 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 243 273 - -
Vvi18g0969 456 ProSiteProfiles Trp-Asp (WD) repeats profile. 243 273 IPR001680 GO:0005515
Vvi18g0969 456 MobiDBLite consensus disorder prediction 422 447 - -
Vvi18g0969 456 MobiDBLite consensus disorder prediction 55 72 - -
Vvi18g0969 456 MobiDBLite consensus disorder prediction 422 456 - -
Vvi18g0969 456 MobiDBLite consensus disorder prediction 18 46 - -
Vvi18g0969 456 Pfam WD domain, G-beta repeat 370 415 IPR001680 GO:0005515
Vvi18g0969 456 Pfam WD domain, G-beta repeat 238 273 IPR001680 GO:0005515
Vvi18g0969 456 Pfam WD domain, G-beta repeat 331 362 IPR001680 GO:0005515
Vvi18g0969 456 Pfam WD domain, G-beta repeat 295 321 IPR001680 GO:0005515
Vvi18g0969 456 Pfam WD domain, G-beta repeat 204 232 IPR001680 GO:0005515
Vvi18g0969 456 Pfam WD domain, G-beta repeat 120 159 IPR001680 GO:0005515
Vvi18g0969 456 ProSiteProfiles Trp-Asp (WD) repeats profile. 333 362 IPR001680 GO:0005515
Vvi18g0969 456 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 201 238 - -
Vvi18g0969 456 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 40 418 IPR045182 -
Vvi18g0969 456 CDD WD40 95 415 - -
Vvi18g0969 456 FunFam BnaA09g28200D protein 191 278 - -
Vvi18g0969 456 ProSiteProfiles Trp-Asp (WD) repeats profile. 201 242 IPR001680 GO:0005515
Vvi18g0969 456 SMART WD40_4 326 363 IPR001680 GO:0005515
Vvi18g0969 456 SMART WD40_4 368 415 IPR001680 GO:0005515
Vvi18g0969 456 SMART WD40_4 84 121 IPR001680 GO:0005515
Vvi18g0969 456 SMART WD40_4 194 233 IPR001680 GO:0005515
Vvi18g0969 456 SMART WD40_4 122 159 IPR001680 GO:0005515
Vvi18g0969 456 SMART WD40_4 283 322 IPR001680 GO:0005515
Vvi18g0969 456 SMART WD40_4 236 274 IPR001680 GO:0005515
Vvi18g0969 456 MobiDBLite consensus disorder prediction 1 72 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0969 Vvi-Chr18 9890823 9892193 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g0969 240 435 Miscellaneous Gene Families AT5G08390 25.743 3.95e-07 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0969 - - vvi:100262588 892.878