Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0946 ATGGCCACAGCATCAGCAATACTTTGTCCGGCCACGGTGACTGCCAGAGTCAGGAGCTCCGGCAGCAAAACCCAGAAGGGAGAGAAGAAAGTGGTGTACGTAGCAGGGCTGAACAGCTTTGGGGGCCTAAAAGCCCACAACAGCGTGGTAGCAATGGGCGTTCCGATGTGCACTGAACAGTGCTTTGCAAATGTGGTGAGCTCCTTGAAAGCAAAAGGAAGAGGTGGCGGTGGTGCCCTATCTTCCACATGCAGCGCTGCTTCTGAAATATTCAGGATTGCTGCCATCATGAACGCCCTTGTGCTCATTGGGGTTGCTGTTGGATTCGTTCTTCTCCGAATAGAGGCATCTGTGGAGGAATCTGAGTGA 369 0.5285 MATASAILCPATVTARVRSSGSKTQKGEKKVVYVAGLNSFGGLKAHNSVVAMGVPMCTEQCFANVVSSLKAKGRGGGGALSSTCSAASEIFRIAAIMNALVLIGVAVGFVLLRIEASVEESE* 123
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0946 122 Pfam PetM family of cytochrome b6f complex subunit 7 89 115 IPR012595 GO:0009512
Vvi18g0946 122 PANTHER B6F COMPLEX SUBUNIT, PUTATIVE, EXPRESSED-RELATED 1 122 - -
Vvi18g0946 122 Hamap Cytochrome b6-f complex subunit 7 [petM]. 86 118 IPR012595 GO:0009512
Vvi18g0946 122 SUPERFAMILY PetM subunit of the cytochrome b6f complex 87 119 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0946 Vvi-Chr18 9680176 9680544 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0946 - - vvi:100264352 224.172