LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vvi18g0920	ATGAACACCAGGGTCCGGACAAAGCTACAGAACATGAAAGCTCCTATGAAGCATGATAAGGATAAGGTGGAAATGCAGGGCACCAGAGGAATGGATGCCAAGAGAGCAACCGCAAATAGACGAGGACCGAGCAGAGATAGAAAAATGGCCCTACAACAAGATGTTGATAAGCTAAAGAAGAAGCTTAGACACGAAGAGAATGTCCACAGAGCTTTAGAGAGGGCCTTCAATAGACCTTTGGGAGCTCTACCTCGCCTTCCTCCTTATCTCCCTCCTTGTACATTGGAGCTTCTTGCTGAAGTAGCTATTCTGGAAGAGGAGGTTGTTCGCCTTGAGGAACAAGTTGTGCACTTTAGACAAGCTGACAGGCGGGGAAAAGAGAATCAATCATATGCTAATTCTACAAAGAACAACAAGCGAGACCCAAATAATAAAGCCCAAAAAATATCAACTCCAGTGAAAAGACCTCCAATAGAGCATGGATCAGCGGAGAAGCATCTAGACTCTCAGAAATTACAGCTAGAAAACAGAGTAGTAGACCAAGAAAATGCAGAAACAAGAACTTCTCTCACTCCAGATGAAAGACTATCTGCAGATGATAAGCCAAATAAAATTTCTGAGGATATTTTGAGGTGCCTATTTAGCATTTTCTTAAGAATGAGCACATTGAAGAGCAGGGGCACATCAGAAAATTTACCTTCCCTCCCATCATTAGCTTCTCATGGAAGTGGTGAAGAGACAGAGCTACAGGATCCTTATGGCATTTGTTCAGAATTTGGAAAGAGAGATATTGGTCCATATAAGCATTTGTTTTCGATTCAAGCTAGCTCAATCAATCTAAACCGGACGGCAAATTCTTTGTTTCTTGTTCATAGACTGAAGCGCCTCCTCGGGAAACTTGCCTCTGTTAACTTACAGGGCCTAACCCATCAGGAGAAGCTTGCTTTCTGGATCAACACCTATAATTCCTGCATGATGAATGCATTCCTGGAACATGGAATACCAGGGAATCCAGAGATGGTTGTTGAATTGATGAGGAAGGCAACAATAAATGTGGGGGGACACTTGCTAAACGCAATAACTATTGAACATTTCATCCTGAGGCTGCCTTATCACATAAAATATACCTTTCCGAAGGGTGCGAAAAACGATGAGATGACAGCAAGAAGCATCTATGGGTTGGAGTTATCTGAACCATTAGTGACATTTGCACTCTCCTGTGGAAGCTGGTCCTCCCCTGCTGTGAGAGTGTATACCGCATCTCAGGTTGAGAATGAACTGGAAGTTGCAAAAAGAGAGTACTTACAGGCTGCTGTGGGAATCTCAACAACCAAGTTGTTTGCAATCCCAAAGCTGTTGGATTGGTATCTACTTGACTTTGCAAAGGACTTTGAATCATTTCTTGATTGGATTTGCCTTCAGCTACCAAGTGAACTTGGCAAAGAAGCAATCAAGTGCCTGGAAAGAGGAAACAGCGAGCCTCTTTCACAATTTGTCCAAGTTATCCCATATGAGTTCAGTTTCAGGTATCTGCTGCACATAAAATAA	1548	0.4276	MNTRVRTKLQNMKAPMKHDKDKVEMQGTRGMDAKRATANRRGPSRDRKMALQQDVDKLKKKLRHEENVHRALERAFNRPLGALPRLPPYLPPCTLELLAEVAILEEEVVRLEEQVVHFRQADRRGKENQSYANSTKNNKRDPNNKAQKISTPVKRPPIEHGSAEKHLDSQKLQLENRVVDQENAETRTSLTPDERLSADDKPNKISEDILRCLFSIFLRMSTLKSRGTSENLPSLPSLASHGSGEETELQDPYGICSEFGKRDIGPYKHLFSIQASSINLNRTANSLFLVHRLKRLLGKLASVNLQGLTHQEKLAFWINTYNSCMMNAFLEHGIPGNPEMVVELMRKATINVGGHLLNAITIEHFILRLPYHIKYTFPKGAKNDEMTARSIYGLELSEPLVTFALSCGSWSSPAVRVYTASQVENELEVAKREYLQAAVGISTTKLFAIPKLLDWYLLDFAKDFESFLDWICLQLPSELGKEAIKCLERGNSEPLSQFVQVIPYEFSFRYLLHIK*	516

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vvi18g0920	515	MobiDBLite	consensus disorder prediction	122	200	-	-
	Vvi18g0920	515	Coils	Coil	48	75	-	-
	Vvi18g0920	515	Coils	Coil	94	121	-	-
	Vvi18g0920	515	MobiDBLite	consensus disorder prediction	158	200	-	-
	Vvi18g0920	515	MobiDBLite	consensus disorder prediction	127	150	-	-
	Vvi18g0920	515	Pfam	Leucine-zipper of ternary complex factor MIP1	45	119	IPR025757	-
	Vvi18g0920	515	MobiDBLite	consensus disorder prediction	12	46	-	-
	Vvi18g0920	515	MobiDBLite	consensus disorder prediction	226	246	-	-
	Vvi18g0920	515	MobiDBLite	consensus disorder prediction	226	244	-	-
	Vvi18g0920	515	Pfam	Protein of unknown function, DUF547	306	435	IPR006869	-
	Vvi18g0920	515	PANTHER	EXPRESSED PROTEIN	34	513	-	-
	Vvi18g0920	515	MobiDBLite	consensus disorder prediction	1	46	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vvi18g0920	Vvi-Chr18	9433848	9437644	Dispersed

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vvi18g0920	-		-	vvi:100266128	792.727