Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0909 ATGACTAATTGTCAGATGGAGAAATCACTCGTACCTCAAATCCAGCCCCCAACATATGGTAGCCTAGTCACCATTCTTAGTATTGATGGAGGTGGTATCAGGGGCATCATCCCTGCAACGATCCTTGCGCTTCTGGAATCACAACTTCAGGAGCTGGATGGTGATGATGCAAGGATTGCTGACTACTTCGACGTGATTGCTGGAACAAGCACAGGAGGTCTTGTGACTGCTATGCTAACTGCTCCGGATGATCAGAAGCGTCCTCTATTTGCAGCCAAAGAAATCATGCCTTTTTATCTGGAGCATGGCCCTAAAATCTTTCCACAGACAAGGGGTATTTTTGGCTGGATCATGAGCATAGTGAGATCATTAATTGGGCCCAAATACGATGGGAAATACCTCAAACGCATCACAAAGGAGAAACTAGGAGGGACCCGGTTGCATGAGACATTGACCAGTGTGGTTATTCCAACCTTTGATATCAAGAGTTTGCAGCCAACCATTTTCTCCACCTATGAGGTGAAAAGATCCCCATGTTTGGATGCTCCACTGGCTGACATATGCATTGGTAGCTCTGCAGCACCAACATACTTTCCTGGCCATTACTTTAAAAACCAAGATAAAGAAGGAAAAACACAGGAATTCAATCTTATTGATGGTGGTGTTGCCGCAAATAACCCGGCTTTAGTTGCCATAAGCCAAGTAACAAAACAGGTTTTCGACAAAAACCCAGATTTCTTCCCAATTAAGCCCATGGACTTTGGCCGCTTTCTAGTGATCTCAATAGGCACTGGCTCTCCAAAGTCGGAACAGAAATACAATGCCAAAATGGCATCCAAATGGGGCGTTTTGGGTTGGCTACTTCATGGTGGTTCCACTCCTTTGGTGGATGTGTTCATGCAAGCAAGTGCAGATATGGTTGATTTCCATATTTCCATGGTTTTCCAAGCCCTTCATTCTGAAGATAACTACCTCCGAATCCAAGATGACACACTACGTGGAAAAGATGCTTCAGTTGATGTCGCAACCGAGGAAAACTTGGACAACCTTGTGAAAATCGGAGAAAGGCTGCTGAAGAAACCAGTTTCAAGGGTGAACTTGGAGACAGGTCTCTCTGAGCCAGTTGAAAATGGTGGCACTAATGAAGAGGCTCTGAAAAGGTTTGCAAAGCTACTCTCTGATGAGAAGAGACTCCGAGAGACACGATTACCAAATCCCAAGAAAGACTTGAAGTAG 1236 0.449 MTNCQMEKSLVPQIQPPTYGSLVTILSIDGGGIRGIIPATILALLESQLQELDGDDARIADYFDVIAGTSTGGLVTAMLTAPDDQKRPLFAAKEIMPFYLEHGPKIFPQTRGIFGWIMSIVRSLIGPKYDGKYLKRITKEKLGGTRLHETLTSVVIPTFDIKSLQPTIFSTYEVKRSPCLDAPLADICIGSSAAPTYFPGHYFKNQDKEGKTQEFNLIDGGVAANNPALVAISQVTKQVFDKNPDFFPIKPMDFGRFLVISIGTGSPKSEQKYNAKMASKWGVLGWLLHGGSTPLVDVFMQASADMVDFHISMVFQALHSEDNYLRIQDDTLRGKDASVDVATEENLDNLVKIGERLLKKPVSRVNLETGLSEPVENGGTNEEALKRFAKLLSDEKRLRETRLPNPKKDLK* 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0909 411 SUPERFAMILY FabD/lysophospholipase-like 23 383 IPR016035 -
Vvi18g0909 411 ProSiteProfiles Patatin-like phospholipase (PNPLA) domain profile. 26 232 IPR002641 GO:0006629
Vvi18g0909 411 Pfam Patatin-like phospholipase 26 232 IPR002641 GO:0006629
Vvi18g0909 411 PANTHER XYLOSE ISOMERASE 6 400 - -
Vvi18g0909 411 CDD Pat17_isozyme_like 20 370 - -
Vvi18g0909 411 Gene3D Cytosolic phospholipase A2 catalytic domain 14 403 - -
Vvi18g0909 411 FunFam Patatin 15 404 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0909 Vvi-Chr18 9330426 9332592 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g0909 5 411 Miscellaneous Gene Families AT2G26560 63.391 0.0 528
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0909 - - vvi:100252227 822.002