Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0902 ATGGAGAAATCACTCTTACCTCAAATCCAGCCCCCAACTTATGGTAACCTAGTCACCATTCTTAGTATTGATGGAGGTGGTATCAGGGGCATCATTCCTGCAACTATCCTTGCTTGCCTGGAATCTCAACTTCAGGAGCTGGATGGTGATGATGCGAGGATTGCAGACTACTTCGATGTGATTGCTGGAACAAGCACAGGTGGTCTTGTGACTGCCATGCTAACTGCTCCGAATGATGAGAAACGTCCTCTATTCGCAGCCAAAGACATCAAGCCCTTTTATCTTAAGCATGGCCCTAAAATATTTCCACAGAGAAGGGGTATTTTCGGCTGGATCATGAATATTTTTAGATCAATAGTTGGGCCCAATTATGATGGGAAATACCTTCACAACCTCATAAAGGAGAAACTAGGAAGGACTCGGTTGCATCAGACCTTGACCAGTGTGGTTATTCCAACTTTTGATATCAAGAGTTTGCAGCCAAGCATTTTCTCCTCCTATGAGGTTAAAAGATCCCCAAGTTTGGATGCTCCACTGGCTGACATATGCATTGGTAGCTCTGCAGCACCAACATACTTTCCGGCCTATTTCTTTAAAAACCAAGATAAAGAAGGAAAAGCACGGGAACTCAATCTTATTGATGGTGGTGTCGCAGCAAATAATCCGGCTTTAGTTGCCATAAGCCAAGTAACGAAACAAGTTTTTGACAAAAACCCAGATTTCTTACCAATTAAACCCATGGACTATGGCCGCTTTCTAGTGATCTCAATAGGAACTGGCTCTCCAAAGTCAGAACAGAAATACAATGCCAAAATGGCAGCCAAATGGGGCGTTTTGGGTTGGCTACTTCATGGTGGTTCCACTCCTTTGGTGGATGTGTTTACGCAAGCAAGTGCAGATATGGTTGATTTCCATATTTCCGTGGTTTTCCAAGCCCTTCATTCTGAAGATAACTACCTCCGAATCCAAGAAAACTTGGGCAACCTTGTGAAAATCGGAGAAAGGCTGCTGAAGAAACCAGTTTCAAGGGTGAACTTGGAGACAGGTCTCTCTGTGCCAGTTGAAAATTGCGGCACTAATGAAGAGGCTCTCAAAAGGTTTGCAAAGCTACTCTCTGATGAGAAGAGACTCCGAGAGACAAGGTCACCAAATCCCAAGAAAAACTTGAAGTAG 1173 0.439 MEKSLLPQIQPPTYGNLVTILSIDGGGIRGIIPATILACLESQLQELDGDDARIADYFDVIAGTSTGGLVTAMLTAPNDEKRPLFAAKDIKPFYLKHGPKIFPQRRGIFGWIMNIFRSIVGPNYDGKYLHNLIKEKLGRTRLHQTLTSVVIPTFDIKSLQPSIFSSYEVKRSPSLDAPLADICIGSSAAPTYFPAYFFKNQDKEGKARELNLIDGGVAANNPALVAISQVTKQVFDKNPDFLPIKPMDYGRFLVISIGTGSPKSEQKYNAKMAAKWGVLGWLLHGGSTPLVDVFTQASADMVDFHISVVFQALHSEDNYLRIQENLGNLVKIGERLLKKPVSRVNLETGLSVPVENCGTNEEALKRFAKLLSDEKRLRETRSPNPKKNLK* 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0902 390 CDD Pat17_isozyme_like 15 349 - -
Vvi18g0902 390 PANTHER XYLOSE ISOMERASE 7 379 - -
Vvi18g0902 390 Pfam Patatin-like phospholipase 21 227 IPR002641 GO:0006629
Vvi18g0902 390 Gene3D Cytosolic phospholipase A2 catalytic domain 9 383 - -
Vvi18g0902 390 FunFam Patatin 10 383 - -
Vvi18g0902 390 SUPERFAMILY FabD/lysophospholipase-like 16 365 IPR016035 -
Vvi18g0902 390 ProSiteProfiles Patatin-like phospholipase (PNPLA) domain profile. 21 227 IPR002641 GO:0006629
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0902 Vvi-Chr18 9238035 9240206 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g0902 9 390 Miscellaneous Gene Families AT2G26560 62.750 9.99e-179 501
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0902 - - vvi:100267749 770