Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0901 ATGGGAGAAGGTCCAAAATCACCCCTACAGCCTCCAACTTATGGAAATCTAATCACCATTCTCAGCATCGATGGAGGTGGAATAAGAGGGCTTATCCCAGGAACAGTCCTTGGCTTCCTGGAGTCTGAGCTTCAGAAGCTGGATGGTGAAGACGCGAGAATTTCAGATTATTTTGATGTGATTGCAGGAACAAGCACCGGTGGCCTCGTGACTGCCATGCTAACTACTCCCAATGAAAACACTGGCCGACCCTTGTTTTCTGCCAAAGATATCAAGGACTTCTACCTTGATCACTGCCCTAAGATTTTTCCACAGCACAGTCATGATCCAATTCCTCATGTTACAAAGGTAGTTACAGCCTTATCAGGACCAAAATATGATGGGAAGTATCTGCACAACCTTGTTAAAGAAAAACTAGGGGAAACACGATTACACCAGACCCTTACTAATGTTGTTATCCCAACATTTGACATCAAGCGCCTTCAGCCAACAATATTTTCGACTTATCAGGTGAAGAGCAGACCAAGTTTAGATGCCTTACTGTCAGATATATGTATTGGAACCTCAGCAGCACCCACTTATCTTCCAGCTCATTATTTCGAAACCAAAGACCCTGCCGGGAGAGTTAGAGAATTCAACCTCATTGATGGTGGTGTAGCTGCAAATAATCCGACTTTGGTTGCTATTGGGGAAGTGACCAAGGAGATCACCCGGGGTAGTCCTGATTTCTTTCCTATAAAGCCAATGGACTATGGCCGGTTTCTAGTAATATCCTTGGGAACTGGGTCATCAAAAGCCGAAGAAAAATACAATGCTGATGAAGCAGCCAAGTGGGGTGTGTTGGGATGGTTGACCAGTGGTGGTTCCACCCCCTTAGTGAAAGTGTTTACCCAAGCAAGCGGAGATATGATCGACTTACACCTTTCACAGATTTTTCAAGCCCTTCACTCGGAAAAAAGCTATCTTCGGATACAGGATGATACATTGAGCGGTATAACATCATCAGTCGACATAGCCACAAAGGAAAATTTGGATGATCTTGTGAAAATTGGTGAGGAGTTGTTAAAGAAAAGGGTCTCAAGGGTTAACCTGGATACAGGTATCTTTGAGCCTTCAAATCACGAGACCAATGAGGAGGCTCTCACAAGTTTTGCAAGACTACTCTCCCAAGAGAAGCAACGTAGAGATACTAGGTCACCACATGGACATGCTGCCGCTTCTAAAGGATTGGTCGTTGTCTGA 1242 0.4461 MGEGPKSPLQPPTYGNLITILSIDGGGIRGLIPGTVLGFLESELQKLDGEDARISDYFDVIAGTSTGGLVTAMLTTPNENTGRPLFSAKDIKDFYLDHCPKIFPQHSHDPIPHVTKVVTALSGPKYDGKYLHNLVKEKLGETRLHQTLTNVVIPTFDIKRLQPTIFSTYQVKSRPSLDALLSDICIGTSAAPTYLPAHYFETKDPAGRVREFNLIDGGVAANNPTLVAIGEVTKEITRGSPDFFPIKPMDYGRFLVISLGTGSSKAEEKYNADEAAKWGVLGWLTSGGSTPLVKVFTQASGDMIDLHLSQIFQALHSEKSYLRIQDDTLSGITSSVDIATKENLDDLVKIGEELLKKRVSRVNLDTGIFEPSNHETNEEALTSFARLLSQEKQRRDTRSPHGHAAASKGLVVV* 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0901 413 PANTHER XYLOSE ISOMERASE 11 396 - -
Vvi18g0901 413 Gene3D Cytosolic phospholipase A2 catalytic domain 10 400 - -
Vvi18g0901 413 FunFam Patatin 10 400 - -
Vvi18g0901 413 Pfam Patatin-like phospholipase 21 229 IPR002641 GO:0006629
Vvi18g0901 413 SUPERFAMILY FabD/lysophospholipase-like 17 368 IPR016035 -
Vvi18g0901 413 CDD Pat17_isozyme_like 15 367 - -
Vvi18g0901 413 ProSiteProfiles Patatin-like phospholipase (PNPLA) domain profile. 21 229 IPR002641 GO:0006629
Vvi18g0901 413 MobiDBLite consensus disorder prediction 391 413 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0901 Vvi-Chr18 9220780 9222765 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g0901 3 404 Miscellaneous Gene Families AT2G26560 69.403 0.0 578
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0901 - - vvi:100257463 825.854