Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0898 ATGGAGAAATCACTCTTACCTCAAATCCAGCCCCCAACTTATGGTAACCTAGTCACCATTCTTAGTATTGATGGACGTGGTATCAGGGGCATCATTCCTGCAACTATCCTTGCTTGTCTGGAATCTCAACTTCAGGAGCTGGATGGTGATGATGCAAGGATTGCAGACTACTTCGATGTGATTGCTGGAACAAGCACAGGTGGTCTTGTGACTGCCATGCTAACTGCTCCGAATGATGAGAAACGTCCTCTATTCGCAGCCAAAGACATCAAGCCCTTTTATCTTGAGCACGGCCCTAAAATATTTCCACACAGAAGGGGTATTTTCGGCTGGATCATGAATATTTTTAGATCAATAGTTGGGCCCAATTATGATGGGAAATACCTTCACAACCTCATAAAGGAGAAACTAGGAAGGACTCGGTTGCATCAGACCTTGACCAGTGTGGTTATTCCAACTTTTGATATCAAGAGTTTGCAGCCAAGCATTTTCTCCTCCTATGAGGTTAAAAGATCCCCAAGTTTGGATGCTCCACTGGCTGACATATGCATTGGTAGCTCTGCAGCACCAACATACTTTCCGGCCTATTTCTTTAAAAACCAAGATAAAGAAGGAAAAGCACGGGAACTCAATCTTATTGATGGTGGTGTCGCAGCAAATAATCCGGCTTTAGTTGCCATAAGCCAAGTAACGAAACAAGTTTTTGACAAAAACCCAGATTTCTTACCAATTAAACCCATGGACTATGGCCGCTTTCTAGTGATCTCAATAGGAACTGGCTCTCCAAAGTCAGAACAGAAATACAATGCCAAAATGGCAGCCAAATGGGGCGTTTTGGGTTGGCTACTTCATGGTGGTTCCACTCCTTTGGTGGATGTGTTTACGCAAGCAAGTGCAGATATGGTTGATTTCCATATTTCCGTGGTTTTCCAAGCCCTTCATTCTGAAGATAACTACCTCCGAATCCAAGATGATACATTACATGGAACGAATGCTACGGTTGATGTCACCACCAAGGAAAACTTGGGCAACCTTGTGAAAATCGGAGAAAGGCTGCTGAAGAAACCAGTTTCAAGGGTGAACTTGGAGACAGGTCTCTCTGTGCCAGTTGAAAATTGCGGCACTAATGAAGAGGCTCTCAAAAGGTTTGCAAAGCTACTCTCTGATGAGAAGAGACTCCGAGAGACAAGATCACCAAATCCCAAGAAAAACTTGAAGTAG 1221 0.4382 MEKSLLPQIQPPTYGNLVTILSIDGRGIRGIIPATILACLESQLQELDGDDARIADYFDVIAGTSTGGLVTAMLTAPNDEKRPLFAAKDIKPFYLEHGPKIFPHRRGIFGWIMNIFRSIVGPNYDGKYLHNLIKEKLGRTRLHQTLTSVVIPTFDIKSLQPSIFSSYEVKRSPSLDAPLADICIGSSAAPTYFPAYFFKNQDKEGKARELNLIDGGVAANNPALVAISQVTKQVFDKNPDFLPIKPMDYGRFLVISIGTGSPKSEQKYNAKMAAKWGVLGWLLHGGSTPLVDVFTQASADMVDFHISVVFQALHSEDNYLRIQDDTLHGTNATVDVTTKENLGNLVKIGERLLKKPVSRVNLETGLSVPVENCGTNEEALKRFAKLLSDEKRLRETRSPNPKKNLK* 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0898 406 PANTHER XYLOSE ISOMERASE 7 395 - -
Vvi18g0898 406 FunFam Patatin 10 399 - -
Vvi18g0898 406 CDD Pat17_isozyme_like 15 365 - -
Vvi18g0898 406 SUPERFAMILY FabD/lysophospholipase-like 16 381 IPR016035 -
Vvi18g0898 406 ProSiteProfiles Patatin-like phospholipase (PNPLA) domain profile. 21 227 IPR002641 GO:0006629
Vvi18g0898 406 Pfam Patatin-like phospholipase 21 227 IPR002641 GO:0006629
Vvi18g0898 406 Gene3D Cytosolic phospholipase A2 catalytic domain 9 399 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0898 Vvi-Chr18 9163501 9165669 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g0898 9 406 Miscellaneous Gene Families AT2G26560 64.750 0.0 524
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0898 - - vvi:100254055 813.527